Package: BitSeq
Type: Package
Depends: Rsamtools, zlibbioc
Imports: IRanges
LinkingTo: Rsamtools, zlibbioc
Title: Transcript expression inference and differential expression
        analysis for RNA-seq data
Version: 1.0.1
Date: 2012-04-30
Author: Peter Glaus, Antti Honkela and Magnus Rattray
Maintainer: Peter Glaus <glaus@cs.man.ac.uk>
Description: The BitSeq package is targeted for transcript expression analysis and differential expression analysis of RNA-seq data in two stage process. In the first stage it uses Bayesian inference methodology to infer expression of individual transcripts from individual RNA-seq experiments. The second stage of BitSeq embraces the differential expression analysis of transcript expression. Providing expression estimates from replicates of multiple conditions, Log-Normal model of the estimates is used for inferring the condition mean transcript expression and ranking the transcripts based on the likelihood of differential expression.
License: Artistic-2.0
biocViews: GeneExpression, DifferentialExpression,
        HighThroughputSequencing, RNAseq
Packaged: 2012-05-01 06:22:57 UTC; biocbuild
Built: R 2.15.0; i386-pc-mingw32; 2012-05-01 09:47:26 UTC; windows
Archs: i386, x64
