Package: phyloseq
Version: 1.0.3
Date: 2012-09-11
Title: Handling and analysis of high-throughput phylogenetic sequence
        data.
Description: phyloseq is a set of classes, and tools to
    facilitate the import, storage, analysis, and graphical
    display of phylogenetic sequencing data.
Maintainer: Paul J. McMurdie <mcmurdie@stanford.edu>
Author: Paul J. McMurdie <mcmurdie@stanford.edu>, Susan
    Holmes <susan@stat.stanford.edu>
License: AGPL-3
Imports: foreach (>= 1.3), igraph0 (>= 0.5), multtest (>= 2.8), plyr
        (>= 1.7), RJSONIO (>= 0.98), vegan (>= 2.0)
Depends: R (>= 2.15.0), methods, ade4 (>= 1.4), ape (>= 2.8), ggplot2
        (>= 0.9.2), picante (>= 1.3), reshape (>= 0.8.4)
Suggests: genefilter
Enhances: doParallel (>= 1.0)
biocViews: Clustering, Classification, MultipleComparisons,
        QualityControl, GeneticVariability, HighThroughputSequencing
Collate: 'allClasses.R' 'allPackage.R' 'allData.R' 'as-methods.R'
        'show-methods.R' 'plot-methods.R' 'extract-methods.R'
        'almostAllAccessors.R' 'otuTable-class.R' 'phyloseq-class.R'
        'taxonomyTable-class.R' 'IO-methods.R' 'merge-methods.R'
        'multtest-wrapper.R' 'ordination-methods.R'
        'transform_filter-methods.R' 'validity-methods.R'
        'assignment-methods.R' 'sampleData-class.R' 'extend_vegan.R'
        'network-methods.R' 'distance-methods.R'
Packaged: 2012-09-13 05:52:01 UTC; biocbuild
Built: R 2.15.1; ; 2012-09-13 09:28:02 UTC; unix
