Package: lumi
Type: Package
Title: BeadArray Specific Methods for Illumina Methylation and
        Expression Microarrays
Version: 2.8.0
Date: 2012-03-14
Depends: R (>= 2.10), methylumi (>= 1.7.4), Biobase (>= 2.5.5), nleqslv
Imports: affy (>= 1.23.4), methylumi, genoset, GenomicRanges, IRanges,
        rtracklayer, annotate, Biobase (>= 2.5.5), mgcv (>= 1.4-0),
        hdrcde, KernSmooth, preprocessCore, RSQLite, DBI,
        AnnotationDbi, MASS, graphics, stats, stats4, methods
Suggests: beadarray, limma, vsn, lumiBarnes, lumiHumanAll.db,
        lumiHumanIDMapping, genefilter, RColorBrewer
Author: Pan Du, Gang Feng, Warren Kibbe, Simon Lin
Maintainer: Pan Du <dupan.mail@gmail.com>
Description: The lumi package provides an integrated solution for the Illumina microarray data analysis. It includes functions of Illumina BeadStudio (GenomeStudio) data input, quality control, BeadArray-specific variance stabilization, normalization and gene annotation at the probe level. It also includes the functions of processing Illumina methylation microarrays, especially Illumina Infinium methylation microarrays.
License: LGPL (>= 2)
LazyLoad: yes
biocViews: Microarray, OneChannel, Preprocessing, DNAMethylation,
        QualityControl, TwoChannel
Packaged: 2012-03-31 07:13:22 UTC; biocbuild
Built: R 2.15.0; ; 2012-03-31 12:02:29 UTC; unix
