Package: CancerMutationAnalysis
Type: Package
Title: Cancer mutation analysis
Version: 1.0.0
Author: Giovanni Parmigiani, Simina M. Boca
Maintainer: Simina M. Boca <simina.boca@nih.gov>
Imports: AnnotationDbi, limma, methods, stats
Depends: R (>= 2.10.0), qvalue
Suggests: KEGG.db
Description: This package implements gene and gene-set level analysis
  methods for somatic mutation studies of cancer.  The gene-level
  methods distinguish between driver genes (which play an active role
  in tumorigenesis) and passenger genes (which are mutated in tumor
  samples, but have no role in tumorigenesis) and incorporate a
  two-stage study design.  The gene-set methods implement a
  patient-oriented approach, which calculates gene-set scores for each
  sample, then combines them across samples; a gene-oriented approach
  which uses the Wilcoxon test is also provided for comparison.
BiocViews: Genetics, Bioinformatics
License: GPL (>= 2) + file LICENSE
LazyLoad: yes
Packaged: 2012-03-31 08:33:55 UTC; biocbuild
Built: R 2.15.0; universal-apple-darwin9.8.0; 2012-03-31 11:52:38 UTC; unix
Archs: i386, ppc, x86_64
