MIPSGS {yeastGSData} | R Documentation |
The MIPS gold standard protein complex data set downloaded from the Gerstein Lab web site.
data(MIPSGS)
A data frame with 8617 observations on the following 5 variables.
ORF1
ORF2
CID
NAME
NUMBER
The data are essentially multiprotein complexes, curated from MIPS data,
see also the data set in Mpact
, which is related.
The data are all pairwise members of each complex.
Yu et al. state “ To compile a reference data set with the lowest false-positive rate, we consider two proteins as interaction part- ners if and only if they are in the same complex of the highest level in the catalog. ”
http://interolog.gersteinlab.org
Annotation Transfer Between Genomes: Protein-Protein Interologs and Protein-DNA Regulogs, H. Yu et al, Genome Research, 1107-1118, 2004.
data(MIPSGS)