ccyclered {yeastExpData}R Documentation

~~ data name/kind ... ~~

Description

The data are 2885 yeast genes, common to a number of different experiments. The original data were reported by Cho et al. and were processed to

Usage

data(ccyclered)

Format

A data frame with 2885 observations on the following 11 variables.

Cluster
The cluster number the gene was assigned to.
Distance
The distance from the cluster center?
Y.name
The name of the gene, using standard yeast nomenclature.
SGDID
The Stanford yeast genome database identifier for the gene.
GENE
The common name for the gene.
Chromsome
The chromosome the gene is located on.
Start
The start of the gene, in bases, most likely from the 3' end.
End
The end of the gene.
Introns
The number of introns.
Exons
The location of the exons.
Description
A description of the gene.

Details

Cho, et al. discuss the k means clustering of 2885 Saccharomyces genes into 30 clusters with measurements taken over two synchronized cell cycles.

Source

http://arep.med.harvard.edu/network_discovery

References

Cho, et al. (1998) A genome-wide transcriptional analysis of the mitotic cell cycle. Molecular Cell, 2, 65-73.

Tavazoie, et al. (1999) Systematic determination of genetic network architecture. Nature Genetics, 22, 281-285.

Examples

data(ccyclered)

[Package yeastExpData version 0.9.9 Index]