upstreamSeqs-class {harbChIP}R Documentation

Class "upstreamSeqs"

Description

container for a collection of upstream sequences

Objects from the Class

Objects can be created by calls of the form new("upstreamSeqs", ...). Environments are used to store collections of DNAstrings.

Slots

seqs:
Object of class "environment" ~~
chrom:
Object of class "environment" ~~
revComp:
Object of class "environment" ~~
type:
Object of class "environment" ~~
organism:
Object of class "character" ~~
provenance:
Object of class "ANY" ~~

Methods

Nmers
signature(n = "numeric", orf = "character", usobj = "upstreamSeqs"): obtain all subsequences of length n as view elements of a DNA string
keys
signature(x = "upstreamSeqs"): ...
organism
signature(x = "upstreamSeqs"): ...
seqs
signature(x = "upstreamSeqs"): ...
show
signature(object = "upstreamSeqs"): ...

Author(s)

~~who you are~~

Examples

showClass("upstreamSeqs")
data(sceUpstr)
sceUpstr
keys(sceUpstr)[1:5]

[Package harbChIP version 0.0.4 Index]