\HeaderA{agARACYC}{Mappings between probe identifiers and KEGG pathway identifiers}{agARACYC}
\keyword{datasets}{agARACYC}
\begin{Description}\relax
AraCyc \url{http://www.arabidopsis.org/tools/aracyc/} maintains pathway data
for Arabidopsis thaliana. agARACYC maps probe identifiers to the
common names of the pathways in which the genes represented
by the probe identifiers are involved. Information is obtained from
AraCyc.
\end{Description}
\begin{Details}\relax
Annotation based on data provided by: Tair ( ftp://ftp.arabidopsis.org/Pathways/aracyc\_dump\_20070703 ) on 2007-Aug2
\end{Details}
\begin{References}\relax
\url{http://www.genome.ad.jp/kegg/}
\end{References}
\begin{Examples}
\begin{ExampleCode}
  x <- agARACYC
  # Get the probe identifiers that are mapped to pathways
  mapped_probes <- mappedkeys(x)
  # Convert to a list
  xx <- as.list(x[mapped_probes])
  if(length(xx) > 0) {
    # Get the pathways for the first five probes
    xx[1:5]
    # For the first probe
    xx[[1]]
  }
\end{ExampleCode}
\end{Examples}

