pfahomologyHGID {pfahomology}R Documentation

A vector containing all the HomoloGeneIDs for Plasmodium falciparum

Description

pfahomologyHGID is a vector containing all the HomoloGeneIDs for Plasmodium falciparum. A HomoloGeneID is a unique identifier used by NCBI to represent a sequence in a given organism

Details

The HomoloGeneIDs can be used to obtain data for all the homologous genes in other organisms using the environment pfahomologyDATA.

pfahomologyDATA is an R environment that maps HomoloGeneIds from Plasmodium falciparum to other species. Consult the pfahomologyDATA help page for more information.

Mappings contained in homology5833 were based on data provided by HomoloGene.

HomoloGene: ftp://ftp.ncbi.nih.gov/pub/HomoloGene/old/hmlg.ftp. Built: HomoloGene built date not available

Packagebuilt Wed Aug 29 13:36:25 2007

References

http://www.ncbi.nih.gov/entrez/query.fcgi?db=homologene

Examples

    require("annotate") || stop("annotate unavailable")
    get(pfahomologyHGID[1], pfahomologyDATA)

[Package pfahomology version 2.0.1 Index]