Genome wide annotation for Yeast


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Documentation for package ‘org.Sc.sgd.db’ version 2.0.2

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org.Sc.sgd Bioconductor annotation data package
org.Sc.sgdALIAS Map Open Reading Frame (ORF) Identifiers to Alias Gene Names
org.Sc.sgdCHR Map ORF IDs to Chromosomes
org.Sc.sgdCHRLENGTHS A named vector for the length of each of the chromosomes
org.Sc.sgdCHRLOC ORF IDs to Chromosomal Location
org.Sc.sgdCOMMON2ORF Map Between Yeast Common Names and ORF Identifiers
org.Sc.sgdDESCRIPTION An annotation data file that maps Open Reading Frame (ORF) identifiers to textural descriptions of the corresponding genes
org.Sc.sgdENZYME Map between ORF IDs and Enzyme Commission (EC) Numbers
org.Sc.sgdENZYME2ORF Map between ORF IDs and Enzyme Commission (EC) Numbers
org.Sc.sgdGENENAME Map between ORF IDs and Genes
org.Sc.sgdGO Map between ORF IDs and Gene Ontology (GO)
org.Sc.sgdGO2ALLORFS Map Between Gene Ontology (GO) Identifiers and all ORF Identifiers in the subtree
org.Sc.sgdGO2ORF Map between ORF IDs and Gene Ontology (GO)
org.Sc.sgdINTERPRO Map Yeast Systematic Names to InterPro IDs
org.Sc.sgdMAPCOUNTS Number of mapped keys for the maps in package org.Sc.sgd.db
org.Sc.sgdORGANISM The Organism for org.Sc.sgd
org.Sc.sgdPATH Mappings between ORF identifiers and KEGG pathway identifiers
org.Sc.sgdPATH2ORF Mappings between ORF identifiers and KEGG pathway identifiers
org.Sc.sgdPFAM Map Entrez Gene IDs to Pfam IDs
org.Sc.sgdPMID Map between ORF Identifiers and PubMed Identifiers
org.Sc.sgdPMID2ORF Map between ORF Identifiers and PubMed Identifiers
org.Sc.sgdREJECTORF Rejected Yeast Genes (ORF)
org.Sc.sgdSMART Map Yeast ORF Identifiers to SMART IDs
org.Sc.sgd_dbconn Collect information about the package annotation DB
org.Sc.sgd_dbfile Collect information about the package annotation DB
org.Sc.sgd_dbInfo Collect information about the package annotation DB
org.Sc.sgd_dbschema Collect information about the package annotation DB