m10kcodPFAM             package:m10kcod             R Documentation

_M_a_p _M_a_n_u_f_a_c_t_u_r_e_r _I_D_s _t_o _P_f_a_m _I_D_s

_D_e_s_c_r_i_p_t_i_o_n:

     m10kcodPFAM is an R environment that provides mappings between a
     manufacturer identifier and the associated Pfam identifiers.

_D_e_t_a_i_l_s:

     Each manufacturer identifier maps to a named vector of Pfam
     identifiers.  The name for each Pfam identifier is the IPI
     accession numbe where this Pfam identifier is found.

     If the Pfam is a named NA, it means that the associated Entrez
     Gene id of this manufacturer identifier is found in an IPI entry
     of the IPI database, but there is no Pfam identifier in the entry.

     If the Pfam is a non-named NA, it means that the associated Entrez
     Gene id of this manufacturer identifier is not found in any IPI
     entry of the IPI database.

_R_e_f_e_r_e_n_c_e_s:

     Kersey P. J., Duarte J., Williams A., Karavidopoulou Y., Birney
     E., Apweiler R. The International Protein Index: An integrated
     database for proteomics experiments. Proteomics 4(7): 1985-1988
     (2004) <URL: http://www.ebi.ac.uk/IPI/IPIhelp.html>

_E_x_a_m_p_l_e_s:

             # Convert to a list
             xxx <- as.list(m10kcodPFAM)
             # randomly display 10 probes
             sample(xxx, 10)

