A data package containing annotation data for 12k human CpG island microarray


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Documentation for package ‘hcgi12k’ version 1.1.0

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hcgi12k Bioconductor annotation data package
hcgi12kACCNUM Map Manufacturer identifiers to GenBank Accession Numbers
hcgi12kCHR Map Manufacturer IDs to Chromosomes
hcgi12kCHRLENGTHS A named vector for the length of each of the chromosomes
hcgi12kCHRLOC Map Manufacturer IDs to Chromosomal Location
hcgi12kENTREZID Map between Manufacturer Identifiers and Entrez Gene
hcgi12kENZYME Map Between Manufacturer IDs and Enzyme Commission (EC) Numbers
hcgi12kENZYME2PROBE Map Between Enzyme Commission Numbers and Manufacturer Identifiers
hcgi12kGENENAME Map Between Manufacturer IDs and Genes
hcgi12kGO Map between Manufacturer IDs and Gene Ontology (GO)
hcgi12kGO2ALLPROBES Map Between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers in the subtree
hcgi12kGO2PROBE Map Between Gene Ontology (GO) and Manufacturer Identifiers
hcgi12kLOCUSID Map between Manufacturer Identifiers and Entrez Gene
hcgi12kMAP Map between Manufacturer Identifiers and cytogenetic maps/bands
hcgi12kMAPCOUNTS Quality control information for hcgi12k
hcgi12kOMIM Map between Manufacturer Identifiers and Mendelian Inheritance in Man (MIM) identifiers
hcgi12kORGANISM The Organism for hcgi12k
hcgi12kPATH Mappings between probe identifiers and KEGG pathway identifiers
hcgi12kPATH2PROBE Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers
hcgi12kPFAM Map Manufacturer IDs to Pfam IDs
hcgi12kPMID Map between Manufacturer Identifiers and PubMed Identifiers
hcgi12kPMID2PROBE Map between PubMed Identifiers and Manufacturer Identifiers
hcgi12kPROSITE Map Manufacturer IDs to PROSITE ID
hcgi12kQC Quality control information for hcgi12k
hcgi12kQCDATA Quality control information for hcgi12k
hcgi12kREFSEQ Map between Manufacturer Identifiers and RefSeq Identifiers
hcgi12kSUMFUNC Map between Manufacturer Identifiers and Gene Function Summaries
hcgi12kSYMBOL Map between Manufacturer Identifiers and Gene Symbols
hcgi12kUNIGENE Map between Manufacturer Identifiers and UniGene cluster identifiers