pfamPFAMB2AC {PFAM}R Documentation

Mappings from PFAMB ID to Accession number

Description

Mapping function from PFAMB ID (PFAMB) to the associated Accession number (AC)

Usage

pfamPFAMB2AC(pfamb=NULL)

Arguments

pfamb A character vector of PFAMB ID or NULL (default)

Details

If pfamb is a vector of PFAMB ID, pfamPFAMB2AC will return a list of associated Accession number for the given pfamb. If pfamb is NULL, pfamPFAMB2AC(pfamb=NULL) (or pfamPFAMB2AC()) will return a list of associated Accession number for all the PFAMB ID in the database. Extra information: None More Details: Pfam-B is an automatic clustering of the rest of SWISSPROT and TrEMBL derived from the PRODOM database.

Value

A list of Accession number.

Author(s)

Ting-Yuan Liu

References

http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt

Examples

## Not run: 
    PFAMB2AC <- pfamPFAMB2AC()
    head(PFAMB2AC)
    pfamPFAMB2AC(pfamb=sample(names(PFAMB2AC), 3))
## End(Not run)

[Package PFAM version 2.0.0 Index]