pfamPRINTS2AC {PFAM}R Documentation

Mappings from PRINTS ID to Accession number

Description

Mapping function from PRINTS ID (PRINTS) to the associated Accession number (AC)

Usage

pfamPRINTS2AC(prints=NULL)

Arguments

prints A character vector of PRINTS ID or NULL (default)

Details

If prints is a vector of PRINTS ID, pfamPRINTS2AC will return a list of associated Accession number for the given prints. If prints is NULL, pfamPRINTS2AC(prints=NULL) (or pfamPRINTS2AC()) will return a list of associated Accession number for all the PRINTS ID in the database. Extra information: None More Details: PRINTS (http://umber.sbs.man.ac.uk/dbbrowser/PRINTS/) is a compendium of protein fingerprints.

Value

A list of Accession number.

Author(s)

Ting-Yuan Liu

References

http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt

Examples

## Not run: 
    PRINTS2AC <- pfamPRINTS2AC()
    head(PRINTS2AC)
    pfamPRINTS2AC(prints=sample(names(PRINTS2AC), 3))
## End(Not run)

[Package PFAM version 2.0.0 Index]