pfamDE2AC {PFAM}R Documentation

Mappings from Definition to Accession number

Description

Mapping function from Definition (DE) to the associated Accession number (AC)

Usage

pfamDE2AC(de=NULL)

Arguments

de A character vector of Definition or NULL (default)

Details

If de is a vector of Definition, pfamDE2AC will return a list of associated Accession number for the given de. If de is NULL, pfamDE2AC(de=NULL) (or pfamDE2AC()) will return a list of associated Accession number for all the Definition in the database. Extra information: None More Details: None

Value

A list of Accession number.

Author(s)

Ting-Yuan Liu

References

http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt

Examples

## Not run: 
    DE2AC <- pfamDE2AC()
    head(DE2AC)
    pfamDE2AC(de=sample(names(DE2AC), 3))
## End(Not run)

[Package PFAM version 2.0.0 Index]