pfamAC2PFAMB {PFAM}R Documentation

Mappings from Accession number to PFAMB ID

Description

Mapping function from Accession number (AC) to the associated PFAMB ID (PFAMB)

Usage

pfamAC2PFAMB(ac=NULL)

Arguments

ac A character vector of Accession number or NULL (default)

Details

If ac is a vector of Accession number, pfamAC2PFAMB will return a list of associated PFAMB ID for the given ac. If ac is NULL, pfamAC2PFAMB(ac=NULL) (or pfamAC2PFAMB()) will return a list of associated PFAMB ID for all the Accession number in the database. Extra information: None More Details: Pfam-B is an automatic clustering of the rest of SWISSPROT and TrEMBL derived from the PRODOM database.

Value

A list of PFAMB ID.

Author(s)

Ting-Yuan Liu

References

http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt

Examples

## Not run: 
    AC2PFAMB <- pfamAC2PFAMB()
    head(AC2PFAMB)
    pfamAC2PFAMB(ac=sample(names(AC2PFAMB), 3))
## End(Not run)

[Package PFAM version 2.0.0 Index]