tilingArray-package	tilingArray-package
BGindex	PMindex
breakpoints.breakpointsPretend	breakpointsPretend
comparisonPlot	comparisonPlot
confint	class-segmentation
confint,segmentation-method	class-segmentation
costMatrix	costMatrix
findSegments	findsegments
logLik	class-segmentation
logLik,segmentation-method	class-segmentation
normalizeByReference	normalizeByReference
otherStrand	otherStrand
plot,segmentation,ANY-method	class-segmentation
plotAlongChrom	plotAlongChrom
plotAlongChromLegend	plotAlongChromLegend
plotFeatures	plotFeatures
plotPenLL	plotpenLL
plotSegmentationDots	plotSegmentationDots
plotSegmentationHeatmap	plotSegmentationHeatmap
PMindex	PMindex
posMin	posMin
qcPlots	qcPlots
readCel2eSet	readCel2eSet
residuals.breakpointsPretend	breakpointsPretend
sampleStep	sampleStep
segChrom	segChrom
segment	segment
segmentation-class	class-segmentation
show,segmentation-method	class-segmentation
tilingArray	tilingArray-package
