assessAll              package:affycomp              R Documentation

_A_s_s_e_s_s_m_e_n_t _f_u_n_c_t_i_o_n_s

_D_e_s_c_r_i_p_t_i_o_n:

     Assessment functions. Takes a couple of  'exprSet-class', one for
     spike in another for the dilution and returns a list with
     necessary information to create assessment plots.

_U_s_a_g_e:

     assessAll(d,s,method.name=NULL,verbose=TRUE)

     affycomp(d,s,method.name=NULL,verbose=TRUE,return.it=TRUE)

_A_r_g_u_m_e_n_t_s:

       d: An 'exprSet-class' containing the exrpession measures for the
          Gene Logic's dilution experiment.

       s: An 'exprSet-class' containing expression measures for the 
          Affymetrix's spike-in experiment.

method.name: Name of expression measure being assessed.

 verbose: verbosity flag.

return.it: if 'TRUE' returns assessment lists.

_D_e_t_a_i_l_s:

     'assessAll' performs assessments for Figures 1-6. It is a wrapper
     for 'assessDilution' and 'assessSpikeIn'.

     'affycomp' is a wrapper that does it all... including the
     plottitng and creation of table.

_V_a_l_u_e:

     Lists with the necessary information to make the Figures.

_A_u_t_h_o_r(_s):

     Rafael A. Irizarry

