SD                 package:affycomp                 R Documentation

_S_D _A_s_s_e_s_s_m_e_n_t _F_u_n_c_t_i_o_n_s

_D_e_s_c_r_i_p_t_i_o_n:

     These functions create assessments, figures, and tables for
     expression standard errors

_U_s_a_g_e:

     affycomp.figure7(l,main="Figure 7")
     affycomp.compfig7(l,method.names=as.character(1:length(l)),
                       main="Figure 7")
     tableSD(l,method.names=NULL)

_A_r_g_u_m_e_n_t_s:

       l: a list of lists with the necessary components to create the
          Figure. See details.

method.names: a character vector with the names of the expression
          measures methodologies being compared. 

    main: title of the Figure.

_D_e_t_a_i_l_s:

     This uses the dilution data. The exprsets need to have standard
     error estimates in the 'se.exprs' slot. Read the vignette for more
     details. The functions work similarly to those assessing
     expression measures.

     All these files need the result of 'assessSD'

_V_a_l_u_e:

     Depends on the call.

_A_u_t_h_o_r(_s):

     Rafael A. Irizarry

_E_x_a_m_p_l_e_s:

     data(rma.sd.assessment) ##this was produced with affycomp.assess
     data(lw.sd.assessment) ##this one too
     affycomp.compfig7(list(rma.sd.assessment,lw.sd.assessment))
     affycomp.figure7(rma.sd.assessment)

