\HeaderA{Biobase-package}{Biobase Package Overview}{Biobase.Rdash.package}
\aliasA{Biobase}{Biobase-package}{Biobase}
\keyword{package}{Biobase-package}
\begin{Description}\relax
Biobase Package Overview
\end{Description}
\begin{Details}\relax
Important data classes: \code{\LinkA{ExpressionSet}{ExpressionSet}},
\code{\LinkA{AnnotatedDataFrame}{AnnotatedDataFrame}}
\code{\LinkA{MIAME}{MIAME}}. Full help on methods and
associated functions is available from within class help
pages.

Additional data classes: \code{\LinkA{eSet}{eSet}},
\code{\LinkA{MultiSet}{MultiSet}}. Additional manipulation and data structuring
classes: \code{\LinkA{Versioned}{Versioned}}, \code{\LinkA{VersionedBiobase}{VersionedBiobase}},
\code{\LinkA{aggregator}{aggregator}}, \code{\LinkA{container}{container}}.

Vignette routines: \code{\LinkA{openVignette}{openVignette}},
\code{\LinkA{getPkgVigs}{getPkgVigs}}, \code{\LinkA{openPDF}{openPDF}}.

Package manipulation functions: \code{\LinkA{createPackage}{createPackage}} and
\code{\LinkA{package.version}{package.version}}

Data sets: \code{\LinkA{aaMap}{aaMap}}, \code{\LinkA{sample.ExpressionSet}{sample.ExpressionSet}},
\code{\LinkA{sample.exprSet}{sample.exprSet}}, \code{\LinkA{geneData}{geneData}}.

Introductory information is available from vignettes, type
\code{openVignette()}.

Full listing of documented articles is available in HTML view by
typing \code{help.start()} and selecting \code{Biobase} package from the
\code{Packages} menu or via \code{library(help="Biobase")}.

Signficant deprecated classes: \code{\LinkA{exprSet}{exprSet}},
\code{\LinkA{phenoData}{phenoData}}.
\end{Details}
\begin{Author}\relax
O. Sklyar
\end{Author}

