map2Systematic            package:ppiData            R Documentation

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_p_o_s_s_i_b_l_e

_D_e_s_c_r_i_p_t_i_o_n:

     This function takse the IntAct accension numbers and maps to the
     yeast common names via intact repository and uses the YEAST
     package to map the common names to the YEAST Systematic names.

_U_s_a_g_e:

     map2Systematic(allProt, tableList, sWAC)

_A_r_g_u_m_e_n_t_s:

 allProt: A character vector of proteins to be mapped

tableList: The tableList element of the output from collectIntactData

    sWAC: A named character vector; the names are SwissProt Accesion
          Codes and the elemnets are the Yeast Systematic names

_V_a_l_u_e:

     The return value is a mapping of each Intact ID to it's respecting
     systematic name.

_A_u_t_h_o_r(_s):

     T Chiang

_E_x_a_m_p_l_e_s:

     data(sWAC2Sys)
     dataL = collectIntactData("EBI-375746")
     sysN = map2Systematic(dataL$allBaits, dataL$tableList, sWAC2Sys)

