Krogan2006BPGraph          package:ppiData          R Documentation

_A _d_i_r_e_c_t_e_d _G_r_a_p_h _f_o_r _t_h_e _A_P-_M_S _B_a_i_t _t_o _P_r_e_y _I_n_t_e_r_a_c_t_i_o_n
_d_a_t_a _d_e_t_e_c_t_e_d _b_y _K_r_o_g_a_n _e_t _a_l. _2_0_0_6.

_D_e_s_c_r_i_p_t_i_o_n:

     An instance of class graph, Krogan2006BPGraph is a graphNEL
     object. The nodes are the union of viable baits (VB) and  viable
     prey (VP) of the experiment conducted by Krogan et al.  2006. A
     viable bait is a node that has at least one directed  edge for
     which this node serves as the source. A viable prey  is a node
     that has at least one directed edge for which this  node serves as
     a sink.

     All nodes are indexed by the gene systematic names as given by the
      primary source.

     These graphs are not simple. While we chose not to present data
     with multiple edges between nodes (i.e. if bait b found prey p
     with multiplicity k, we do not assign k directed edges from b to
     p, only a single edge). We do, however, allow self loops to detail
     homodimer relationships.

_U_s_a_g_e:

     data(Krogan2006BPGraph)

_F_o_r_m_a_t:

     The format is: graphNEL "Krogan2006BPGraph"

_S_o_u_r_c_e:

     The adjacency matrix for this graph can be found in the
     bioconductor R-package apComplex.

_R_e_f_e_r_e_n_c_e_s:

     Global landscape of protein complexes in the yeast Saccharomyces 
     cerevisiae. Nature 440, 637-643 (30 March 2006).

_E_x_a_m_p_l_e_s:

     data(Krogan2006BPGraph)

