"FCSsummary-class" {rflowcyt} | R Documentation

## Class "FCSsummary" Summary object for a "FCS-class"

### Description

The data summary statistics along with metadata output help summarize a "FCS-class" object using the "summary" method.

### Objects from the Class

Objects can be created by calls of the form `new("FCSsummary", ...)`.

### Slots

`num.cells`:
  Object of class `"numeric"` the number of cells or rows from the data
`num.param`:
  Object of class `"numeric"` the number of parameters or columns from the data
`univariate.stat`:
  Object of class `"matrix"` five-number summary including the standard deviation of all the column variables
`metadata.info`:
  Object of class `"list"` with the following slots: "Description", "ColumnParametersSummary", and "fcsinfoNames".

### Methods

"print-methods"
  `signature(x = "FCSsummary")`: prints the output of the summary statistics of the data and the metadata
"show-methods"
  `signature(object = "FCSsummary")`: same as "print"

### Author(s)

A.J. Rossini, J.Y. Wan, and Zoe Moodie

### References

Trevor Hastie, Robert Tibshirani, and Jerome Friedman. The Elements of Statistical Learning: Data Mining, Inference, and Prediction. Springer Series in Statistics : New York, 2001. pp.279-283.

Jerome H. Friedman and Nicholas I. Fisher. Bump Hunting in High-Dimensional Data. Tech Report. October 28, 1998.

J. Paul Robinson, et al. Current Protocols in Cytometry. John Wiley & Sons, Inc : 2001.

Mario Roederer and Richard R. Hardy. Frequency Difference Gating: A Multivariate Method for Identifying Subsets that Differe between Samples. Cytometry, 45:56-64, 2001.

Mario Roederer and Adam Treister and Wayne Moore and Leonore A. Herzenberg. Probability Binning Comparison: A Metric for Quantitating Univariate Distribution Differences. Cytometry, 45:37-46, 2001.

Keith A. Baggerly. Probability Binning and Testing Agreement between Multivariate Immunofluorescence Histograms: Extending the Chi-Squared Test. Cytometry, 45:141-150, 2001.

### See Also

`"FCS-class"`, `"show-methods"`, `"print-methods"`

### Examples

    default.sum<-new("FCSsummary")

    ## show, print
    default.sum

[Package rflowcyt version 1.8.0 Index]