idProteinType {ppiStats} | R Documentation

## A function to determine viable baits, viable preys, or homodimers within experimental data-sets.

### Description

These functions take a bait to prey directed graphNEL and returns either a character vector of all proteins which participates in homodimer relationships or a list of two character vectors: a vector of viable baits as well as a vector of viable prey.

### Usage

    idViableProteins(bpGraph)
    idHomodimers(bpGraph)

### Arguments

`bpGraph` | A direced graphNEL

### Value

The return value for idHomodimers is a character vector of those proteins which participates in homodimer relationships.
The return value for idViableProteins is a list of two character vectors:

`viableBaits` | A vector of baits that finds at least one prey in the experimental graphNEL, i.e. the nodes with out-degree at greater than 0
`viablePrey` | A vector of prey which is found by at least one bait in the experimental graphNEL, i.e. the nodes with in-degree at greater than 0

### Author(s)

T Chiang

### Examples

    library(ppiData)
    idViableProteins(Ito2001BPGraph)
    idHomodimers(Ito2001BPGraph)

[Package ppiStats version 1.2.0 Index]