Package: nem
Title: Nested Effects Models to reconstruct phenotypic hierarchies
Version: 1.6.0
Author: Florian Markowetz, Holger Froehlich, Matthias Maneck, with
        contributions from Tim Beissbarth and Claudio Lottaz
Description: The package 'nem' allows to reconstruct features of
        pathways from the nested structure of perturbation effects. It
        takes as input (1.) a set of pathway components, which were
        perturbed, and (2.) high-dimensional phenotypic readout of
        these perturbations (e.g. gene expression or morphological
        profiles). The output is a directed graph representing the
        phenotypic hierarchy.
Reference: Markowetz F, Bloch J, Spang R: Non-transcriptional pathway
        features reconstructed from secondary effects of RNA
        interference, Bioinformatics 2005, 21(21):4026-4032.
Maintainer: Florian Markowetz <florian@genomics.princeton.edu>
Depends: R (>= 2.0), e1071 (>= 1.5), graph (>= 1.10), Rgraphviz (>=
        1.10), RBGL (>= 1.8.1), time (>= 1.0)
Suggests: Biobase (>= 1.10)
biocViews: Microarray, Statistics, GraphsAndNetworks, Pathways
URL: http://www.bioconductor.org
License: GPL version 2.0 or newer
Packaged: Wed Apr 25 04:00:03 2007; biocbuild
Built: R 2.5.0; ; 2007-04-25 07:19:44; windows
