htmlPage {marray} | R Documentation

## Display gene list as a HTML page

### Description

Given a set of index to a data.frame containing gene names information. We create a web page with one element per genes that contains URLs links to various external database links. E.g Operon oligodatabase , Riken, GenBank and PubMed web sites.

### Usage

    htmlPage(genelist, filename = "GeneList.html", geneNames =
                     Gnames, mapURL = SFGL, othernames, title, table.head,
                     table.center = TRUE, disp = c("browser", "file")[1])

    table2html(restable, filename = "GeneList.html", mapURL = SFGL,
                     title, table.head, table.center = TRUE, disp =
                     c("browser", "file")[1])

### Arguments

`restable` | A data.frame that contains only the information you wish to display in the html file. The rows corresponds to a different DNA spots.
`genelist` | A numeric vector of index to a data.frame
`filename` | The name of the file to store the HTML in.
`geneNames` | A data.frame containing the information related the each DNA spots.
`mapURL` | A matrix of characters containing the URL for various external database. E.g `SFGL`.
`othernames` | A data.frame containing other information.
`title` | Title of the HTML page
`table.head` | A character vector of column labels for the table
`table.center` | A logical indicating whether the table should be centered
`disp` | Either "File" or "Browser" (default is Browser). File will save the information in html file, while Browser will create an html files and display information in the user's browser.

### Details

This function is an extension to `ll.htmlpage`

### Value

No value is return, the function produce a html file "filename" and output the results in a browser.

### Author(s)

Yee Hwa Yang

### See Also

`ll.htmlpage`, `URLstring`, `widget.mapGeneInfo`

### Examples

    ##library(annotate)
    data(swirl)
    Gnames <- maGeneTable(swirl)
    swirlmap <- mapGeneInfo(Name = "none", ID="genbank")
    ## htmlPage(100:110, geneNames = Gnames, mapURL = swirlmap, title="Swirl")

    moreinfo <- round(maM(swirl), 2)
    swirlmap <- mapGeneInfo(Name = "pubmed", ID="genbank")
    ##htmlPage(100:110, geneNames = Gnames, mapURL = swirlmap, othernames=moreinfo, title="Swirl", disp="file")

[Package marray version 1.14.0 Index]