write.dataSet {genArise} | R Documentation

## Write dataSet

### Description

Write the values for observations of an object of DataSet class in an output file. This values are writen in columns with the follow order: Cy3, Cy5, Cy3 Background, Cy5 Background, Ids and finally the Zscore value. By default this output file has no header.

### Usage

    write.dataSet(dataSet.spot, fileName, quote
    = FALSE, col.names = FALSE, row.names = FALSE,
    Zscore.min = NULL, Zscore.max = NULL, sep = "\t")

### Arguments

`dataSet.spot` | An object of DataSet class
`fileName` | The name of the output file where the data will be writen. This argument must be quoted.
`quote` | If quote = TRUE, all values in the file will be quoted.
`col.names` | If col.names = TRUE, an integer is writen in every column as header. By default col.names = FALSE.
`row.names` | If row.names = TRUE will be an extra column that numerates every rows in the file.
`Zscore.min` | The lower value in a range, if Zscore.min = NULL then the file will contain all values bellow Zscore.max
`Zscore.max` | The greater value in a range, if Zscore.max = NULL then file will be contain all values above Zscore.min. Both values, Zscore.min and Zscore.max can not be NULL
`sep` | Character to separate the columns in file. By default sep = "t".

### Examples

    data(WT.dataset)
    write.dataSet(dataSet.spot = WT.dataset, fileName = "Example.csv", Zscore.min = 1,
    Zscore.max = 1.5, sep = "\t")

[Package genArise version 1.12.0 Index]