makePalCon {cosmo} | R Documentation

## Constructing a palindromic constraint

### Description

This function constructs a texttt{palCon} object representing a constraint on the unknown position weight matrix that requires the two intervals to be palindromes of each other.

### Usage

    makePalCon(int1, int2, errBnd)

### Arguments

`int1` | `numeric` the first interval
`int2` | `numeric` the second interval
`errBnd` | `numeric` bound on how much corresponding nucleotide frequency are allowed to deviate from each other

### Details

### Value

An object of class texttt{palCon}.

### Author(s)

Fabian Gallusser, fgallusser@berkeley.edu

### See Also

`boundCon`, `subMotifCon`, `palCon`, `posFreqCon`, `shapeDiffCon`, `palCon`

### Examples

    pfc <- makePalCon(1, 3, 0.05)

[Package cosmo version 1.2.0 Index]