boxplotBeads {beadarray} | R Documentation

## Box plot of bead intensities

### Description

Function to produce box plots of the bead intensities from different bead arrays

### Usage

    boxplotBeads(BLData, whatToPlot = "G", arrays = NULL, log = TRUE,
              varwidth = TRUE, ...)

### Arguments

`BLData` | a BeadLevelList object
`whatToPlot` | character string specifying which intensities to plot. Possibilities are `"G"`, `"Gb"` for single channel data and `"G"`, `"Gb"`, `"R"` and `"Rb"` for two-colour data
`arrays` | numeric vector of arrays to plot
`log` | if TRUE log2 intensities are plotted
`varwidth` | logial, indicating whether box widths should be proportional to the number of values in each box plot
`...` | further graphical parameters to `boxplot` function from graphics package

### Details

Produces box plots or the raw intensities from a bead array

### Value

Plot is produced on current graphical device

### Author(s)

Matt Ritchie

### Examples

    data(BLData)

    boxplotBeads(BLData)

[Package beadarray version 1.4.0 Index]