sumStats {ScISI} | R Documentation

## A function to calculate some summary statistics between an two interactomes

### Description

This function takes in a named list of in silico interactomes (by its incidence matrix representation of the bi-partite graph). The function compares each interactome pairwise (with itself as well as with each other interactome) and generates some summary statistics: e.g. the number of redundant protein complexes, the number of protein sub-complexes one interactome may posses with respect to some other interactome (possibly itself), etc.

### Usage

    sumStats(imList, pathToSave = NULL)

### Arguments

`imList` | A named list of in silic interactomes (incidence matrix)
`pathToSave` | A character vector of a path location to where the summary statistics will be saved

### Details

### Value

`redundantM` | A symmetric matrix with the row and column names named by the interactome names. The shows the number of redundancies (i.e. the number of repeated protein complexes) within two interactomes
`subM` | A matrix with the row and column names named by the interactome names. Each entry details how many protein sub-complexes are found within the interactome indexed by the row with respect to the interactome indexed by the column

### Author(s)

TC

### Examples

    gavin <- getAPMSData("Gavin")
    krogan <- getAPMSData("Krogan")
    imList <- lisst()
    imList[[1]] <- gavin
    imList[[2]] <- krogan
    names(imList) <- c("Gavin", "Krogan")

    sumStats(imList)

[Package ScISI version 1.8.0 Index]