\HeaderA{oGtypeExSet-class}{Class "oGtypeExSet" ~~~}{oGtypeExSet.Rdash.class}
\aliasA{addAnno}{oGtypeExSet-class}{addAnno}
\aliasA{coerce,oGtypeExSet,ExpressionSet-method}{oGtypeExSet-class}{coerce,oGtypeExSet,ExpressionSet.Rdash.method}
\aliasA{getSNPindices}{oGtypeExSet-class}{getSNPindices}
\aliasA{initialize,oGtypeExSet-method}{oGtypeExSet-class}{initialize,oGtypeExSet.Rdash.method}
\aliasA{show,oGtypeExSet-method}{oGtypeExSet-class}{show,oGtypeExSet.Rdash.method}
\aliasA{tx\_rsnum}{oGtypeExSet-class}{tx.Rul.rsnum}
\keyword{classes}{oGtypeExSet-class}
\begin{Description}\relax
Experimental class for combining oligo
SnpCallSet with ExpressionSet
\end{Description}
\begin{Section}{Objects from the Class}
Objects can be created by calls of the form \code{new("oGtypeExSet", 
snpCalls=list(), dbConns=list(), x)}
where \code{x} is an \code{\LinkA{ExpressionSet}{ExpressionSet}} instance.
\end{Section}
\begin{Section}{Slots}
\describe{
\item[\code{snpCalls}:] Object of class \code{"list"} named
list of \code{\LinkA{SnpCallSet}{SnpCallSet}} instances  
\item[\code{dbConns}:] Object of class \code{"list"} list
of SQLite connections for SNP annotation structures 
\item[\code{assayData}:] Object of class \code{"AssayData"} from expression data 
\item[\code{phenoData}:] Object of class \code{"AnnotatedDataFrame"} ~~ 
\item[\code{featureData}:] Object of class \code{"AnnotatedDataFrame"} ~~ 
\item[\code{experimentData}:] Object of class \code{"MIAME"} ~~ 
\item[\code{annotation}:] Object of class \code{"character"} ~~ 
\item[\code{.\_\_classVersion\_\_}:] Object of class \code{"Versions"} ~~ 
}
\end{Section}
\begin{Section}{Extends}
Class \code{"\LinkA{ExpressionSet}{ExpressionSet.Rdash.class}"}, directly.
Class \code{"\LinkA{eSet}{eSet.Rdash.class}"}, by class "ExpressionSet", distance 2.
Class \code{"\LinkA{VersionedBiobase}{VersionedBiobase.Rdash.class}"}, by class "ExpressionSet", distance 3.
Class \code{"\LinkA{Versioned}{Versioned.Rdash.class}"}, by class "ExpressionSet", distance 4.
\end{Section}
\begin{Section}{Methods}
No methods defined with class "oGtypeExSet" in the signature.
\end{Section}
\begin{Note}\relax
addAnno, getSNPindices, and tx.rsnum need further
development.
\end{Note}
\begin{Author}\relax
VJ Carey <stvjc@channing.harvard.edu>
\end{Author}
\begin{Examples}
\begin{ExampleCode}
# use new("oGtypeExSet", snpCalls=list(Nsp=nspCalls, Sty=styCalls),
#    dbConns=list(), x3pSet)
showClass("oGtypeExSet")
\end{ExampleCode}
\end{Examples}

