oGtypeExSet-class {GGtools} | R Documentation

## Class "oGtypeExSet" ~~~

### Description

Experimental class for combining oligo SnpCallSet with ExpressionSet

### Objects from the Class

Objects can be created by calls of the form `new("oGtypeExSet", snpCalls=list(), dbConns=list(), x)` where `x` is an `ExpressionSet` instance.

### Slots

`snpCalls`:
  Object of class `"list"` named list of `SnpCallSet` instances
`dbConns`:
  Object of class `"list"` list of SQLite connections for SNP annotation structures
`assayData`:
  Object of class `"AssayData"` from expression data
`phenoData`:
  Object of class `"AnnotatedDataFrame"` ~~
`featureData`:
  Object of class `"AnnotatedDataFrame"` ~~
`experimentData`:
  Object of class `"MIAME"` ~~
`annotation`:
  Object of class `"character"` ~~
`.__classVersion__`:
  Object of class `"Versions"` ~~

### Extends

Class `"ExpressionSet"`, directly. Class `"eSet"`, by class "ExpressionSet", distance 2. Class `"VersionedBiobase"`, by class "ExpressionSet", distance 3. Class `"Versioned"`, by class "ExpressionSet", distance 4.

### Methods

No methods defined with class "oGtypeExSet" in the signature.

### Note

addAnno, getSNPindices, and tx.rsnum need further development.

### Author(s)

VJ Carey <stvjc@channing.harvard.edu>

### Examples

    # use new("oGtypeExSet", snpCalls=list(Nsp=nspCalls, Sty=styCalls),
    #    dbConns=list(), x3pSet)
    showClass("oGtypeExSet")

[Package GGtools version 1.4.0 Index]