plotSamples {BeadExplorer} | R Documentation

## QC sample plots

### Description

Produces QC plots for each sample on the array

### Usage

    plotSamples(rbeadData, nbeadData, beadQC, savegraph = "png", width = 1200, height = 800, extension = "_Samples",
    col = NULL, annotation = TRUE, names = sampleNames(nbeadData), verbose = TRUE, ...)

### Arguments

`rbeadData` | UnNormalised `beadData-class` object
`nbeadData` | Normalised `beadData-class` object
`beadQC` | `beadQC-class` object
`savegraph` | Character specfiying output graph type: "png", "bmp", "jpeg" or NULL for graph in console
`width` | Width in pixels of output graph
`height` | Width in height of output graph
`extension` | Suffix to apply to analysis name to create the filename
`col` | A vector of colours used to plot each sample in the `beadData-class`object, NULL uses default: rainbow
`annotation` | Logcial, specifying whether annotation data should be added to the plots
`names` | Names used to represent each sample, default is sample names
`verbose` | Logical,specifying if a commentary should be outputted
`...` | Arguments passed to `plot`

### Details

Produces QC plots for each sample on the array. Often where filenames are long, these can get cut-off by the plot. In this case it is better to specify- names=1:6 (or greater if the number of samples is more). See package description for more information.

### Value

Nothing

### Author(s)

Gareth Elvidge gareth.elvidge@well.ox.ac.uk

### See Also

See Also as `help`

### Examples

    data(examplebeadData)
    data(examplebeadQC)
    ndata<-normalise(examplebeadData)
    plotSamples(examplebeadData, ndata, examplebeadQC)

[Package BeadExplorer version 1.2.0 Index]