batchAnalysis {BeadExplorer} | R Documentation

## Batch Analysis

### Description

Batch analysis of Illumina BeadStudio V1 output files

### Usage

    batchAnalysis(bkd = "Offset", offset = NULL, method = "Quantile")

### Arguments

`bkd` | A character spcificying the background adjustment method. Options are "Offset" or "Base"
`offset` | A numeric specifiying the offset value to add
`method` | A character specifying a normalisation option. Options are "Quantile", "Qspline", "RobustQuantile"

### Details

This is a wrapper function that looks for all files within the current working directory that end in 'gene profile.csv' and analyses them in series. The corresponding 'qcinfo.csv' files are also required within the working directory. The function basically repeats the default `beadAnalysis` function for every file in the directory. This function can currently only be used for files generated by BeadStudio version 1.

### Value

None

### Author(s)

Gareth Elvidge gareth.elvidge@well.ox.ac.uk

### Examples

    ## Not run:
    batchAnalysis()
    ## End(Not run)

[Package BeadExplorer version 1.2.0 Index]