viablePrey              package:ppiData              R Documentation

_L_i_s_t_s _o_f _v_i_a_b_l_e _p_r_e_y _o_r _b_a_i_t_s _i_n _e_a_c_h _b_a_i_t _t_o _p_r_e_y _d_a_t_a_s_e_t

_D_e_s_c_r_i_p_t_i_o_n:

     These are named lists consisting of either the viable prey or the
     viable baits corresponding to each dataset. 

     The names should be listed by the systematic gene names. If  the
     systematic gene names could not be found, then a common  name is
     used. If the data was obtained from IntAct, and neither a common
     nor a systematic name could be found, the IntAct  Accension
     Identification Code ("EBI-*****") is retained. The  IntAct Codes
     will always be listed first if they exist.

     Because we have chosen to supress the homodimer relationships
     within the respective bait to bait or viable prey directed graphs,
     there will be proteins listed as viable prey which index isolated
     nodes in the graphs. These isolated nodes simply mean that  these
     proteins were only seen to interact within homodimer
     relationships.

_U_s_a_g_e:

     data(viableBaits)
     data(viablePrey)

_F_o_r_m_a_t:

     A named list. Each element is a character vector of the viable
     prey (or baits) for the corresponding dataset.

_E_x_a_m_p_l_e_s:

     data(viablePrey)
     data(viableBaits)
     names(viablePrey)
     names(viableBaits)
     viableBaits[[1]][1:5]

