Ho2002BPGraph            package:ppiData            R Documentation

_A _d_i_r_e_c_t_e_d _G_r_a_p_h _f_o_r _t_h_e _A_P-_M_S _B_a_i_t _t_o _P_r_e_y _I_n_t_e_r_a_c_t_i_o_n
_d_a_t_a _d_e_t_e_c_t_e_d _b_y _H_o _e_t _a_l. _2_0_0_2.

_D_e_s_c_r_i_p_t_i_o_n:

     An instance of class graph, Ho2002BPGraph is a graphNEL object.
     The nodes are the union of viable baits (VB) and  viable prey (VP)
     of the experiment conducted by Ho et al.  2002. A viable bait is a
     node that has at least one directed  edge for which this node
     serves as the source. A viable prey  is a node that has at least
     one directed edge for which this  node serves as a sink.

     All nodes are indexed by the gene systematic names as given  by
     the primary source.

     These graphs are not simple. While we chose not to present data
     with multiple edges between nodes (i.e. if bait b found prey p
     with multiplicity k, we do not assign k directed edges from b to
     p, only a single edge). We do, however, allow self loops to detail
     homodimer relationships.

_U_s_a_g_e:

     data(Ho2002BPGraph)

_F_o_r_m_a_t:

     The format is: graphNEL "Ho2002BPGraph"

_S_o_u_r_c_e:

     The adjacency matrix for this graph can be found in the
     bioconductor R-package apComplex.

_R_e_f_e_r_e_n_c_e_s:

     Systematic identification of protein complexes in Saccharomyces 
     cerevisiae by mass spectrometry. Nature. 2002 Jan
     10;415(6868):180-3.

_E_x_a_m_p_l_e_s:

     data(Ho2002BPGraph)

