Package: stam
Title: Structured Analysis of Microarray Data
Version: 1.4.0
Author: Claudio Lottaz
Description: The stam package performs a biologically structured
        classification of microarray profiles according to clinical
        phenotypes. GO terms are used to link classification results
        to biological aspects. We call biologically focused signatures
        corresponding to these class predictions molecular symptoms.
        Thus, stam allows for molecular stratification of patients
        with complex phenotypes according to presence/absence patterns
        of molecular symptoms.
Maintainer: Claudio Lottaz <Claudio.Lottaz@molgen.mpg.de>
Depends: R (>= 2.3.0), GO (>= 1.11.25), Biobase (>= 1.9.18), pamr (>=
        1.29.0), cluster (>= 1.10.0), annaffy (>= 1.3.2), methods (>=
        2.3.0)
Suggests: golubEsets (>= 1.2.2), vsn (>= 1.9.4), hu6800 (>= 1.11.25)
biocViews: Microarray, Statistics, Classification
SaveImage: yes
URL: http://compdiag.molgen.mpg.de/software/index.shtml
License: GPL version 2.0 or newer
Reference: Claudio Lottaz and Rainer Spang. Molecular decomposition of
        complex clinical phenotypes using biologically structured
        analysis of microarray data. Bioinformatics, 2005,
        21(9):1971-1978 doi: 10.1093/bioinformatics/bti292.
Reference: Claudio Lottaz and Rainer Spang. stam - a Bioconductor compliant 
        R package for structured analysis of microarray data. 
        BMC Bioinformatics. 2005 Aug 25;6(1):211.
Packaged: Tue Apr 25 01:13:22 2006; biocbuild
