plot2sets.FCS            package:rflowcyt            R Documentation

_C_r_e_a_t_e _a _s_c_a_t_t_e_r_p_l_o_t _t_o _s_u_m_m_a_r_y_z_e _a_n_d _c_o_m_p_a_r_e _t_w_o _s_e_r_i_e_s _o_f _F_C_S
_o_b_j_e_c_t_s

_D_e_s_c_r_i_p_t_i_o_n:

     Create a scatterplot to summaryze and compare 1 paraneter from two
     series of FCS objects stored in 2 different plates. The points are
     colored according to their position in the plate (row or column
     number.)

_U_s_a_g_e:

     plot2sets.FCS(data1,data2,varpos=c(1),FUN,nrow=8,ncol=12,ind=c(1:96),col="row",labeling=TRUE,...)                      

_A_r_g_u_m_e_n_t_s:

   data1: a list of fluorescent data from one (or more) FCS object(s)
          or a cytoset

   data2: a list of fluorescent data from one (or more) FCS object(s)
          or a cytoset

  varpos: the numerical column variable position of the FCS objects

     FUN: function to summaryze the distribution of the data, e.g.
          mean, median, IQR, MODE

     col: 

    nrow: numeric, number of rows per plate

    ncol: numeric, number of columns per plate

     ind: numeric vector, index of the wells to be plotted

labeling: 

     ...: any other arguments are passed to the 'plot' function

_V_a_l_u_e:

     None.

_A_u_t_h_o_r(_s):

     Nolwenn Le Meur

_S_e_e _A_l_s_o:

     'plot'

_E_x_a_m_p_l_e_s:

       ##Example I:
       ##data(flowcyt.data)

      ##Draw a scatterplot of the median values
      ##of the Foward scatter and the Side scatter parameters
      ##of each FCS file. The files correspond to samples store in a 96 well plate.
      ##plot2sets.FCS(flowcyt.data,varpos=c(1,2),FUN1=median,nrow=8,ncol=10,ind=c(1:80),col="row",pch="*",labeling=FALSE,xlim=c(0,300),ylim=c(0,300),main="FSCmedian vs.SSCmedian by row",xlab="SSC median",ylab="FSC median")

      
      

