"addParameter-methods"	addParameter-methods
"addParameter-methods",FCS,vector-method	FCS-class
"checkvars-methods"	checkvars-methods
"checkvars-methods",FCS-method	FCS-class
"coerce-methods"	coerce-methods
"coerce-methods",data.frame,FCS-method	FCS-class
"coerce-methods",FCS,data.frame-method	FCS-class
"coerce-methods",FCS,matrix-method	FCS-class
"coerce-methods",matrix,FCS-method	FCS-class
"dim.FCS-methods"	dim.FCS-methods
"dim.FCS-methods",FCS-method	FCS-class
"equals-methods"	equals-methods
"equals-methods",FCS,FCS-method	FCS-class
"FCS"	FCS-class
"FCS-class"	FCS-class
"FCSgate"	FCSgate-class
"FCSgate-class"	FCSgate-class
"FCSggobi"	FCSggobi-class
"FCSggobi-class"	FCSggobi-class
"FCSmetadata"	FCSmetadata-class
"FCSmetadata-class"	FCSmetadata-class
"FCSsummary-class"	FCSsummary-class
"fixvars-methods"	fixvars-methods
"fixvars-methods",FCS-method	FCS-class
"fluors-methods"	fluors-methods
"fluors-methods",FCS-method	FCS-class
"ggobi-methods"	ggobi-methods
"ggobi-methods",FCS-method	FCS-class
"metaData-methods"	metaData-methods
"metaData-methods",FCS-method	FCS-class
"plot-methods"	plot-methods
"plot-methods",FCS,missing-method	FCS-class
"print-methods"	print-methods
"print-methods",FCS-method	FCS-class
"print-methods",FCSmetadata-method	FCSmetadata-class
"print-methods",FCSsummary-method	FCSsummary-class
"show-methods"	show-methods
"show-methods",FCS-method	FCS-class
"show-methods",FCSmetadata-method	FCSmetadata-class
"show-methods",FCSsummary-method	FCSsummary-class
"summary-methods"	summary-methods
"summary-methods",FCS-method	FCS-class
"summary-methods",FCSmetadata-method	FCSmetadata-class
"["	subset-methods
"[",FCSmetadata-method	FCSmetadata-class
"["-methods	subset-methods
"[-methods"	subset-methods
"[-methods",FCS-method	FCS-class
"[-methods",FCSmetadata-method	FCSmetadata-class
"[<-"	subsetassign-methods
"[<-",FCSmetadata-method	FCSmetadata-class
"[<-"-methods	subsetassign-methods
"[<--methods"	subsetassign-methods
"[<--methods",FCS-method	FCS-class
"[<--methods",FCSmetadata-method	FCSmetadata-class
"[["	subset2-methods
"[[",FCSmetadata-method	FCSmetadata-class
"[["-methods	subset2-methods
"[[-methods"	subset2-methods
"[[-methods",FCS-method	FCS-class
"[[-methods",FCSmetadata-method	FCSmetadata-class
"[[<-"	subset2assign-methods
"[[<-"-methods	subset2assign-methods
"[[<-"-methods,FCSmetadata-method	FCSmetadata-class
"[[<--methods"	subset2assign-methods
"[[<--methods",FCS-method	FCS-class
"[[<--methods",FCSmetadata-method	FCSmetadata-class
add.parallel.coordinates	add.parallel.coordinates
add.parallelCoordinates	add.parallelCoordinates
addParameter	addParameter-methods
addParameter,FCS,vector-method	FCS-class
addParameter-methods	addParameter-methods
boxplot.FCS	boxplot.FCS
breakpoints.ProbBin	breakpoints.ProbBin
checkvars	checkvars-methods
checkvars,FCS-method	FCS-class
checkvars-methods	checkvars-methods
coerce,ANY,array-method	coerce-methods
coerce,ANY,call-method	coerce-methods
coerce,ANY,character-method	coerce-methods
coerce,ANY,complex-method	coerce-methods
coerce,ANY,environment-method	coerce-methods
coerce,ANY,expression-method	coerce-methods
coerce,ANY,function-method	coerce-methods
coerce,ANY,integer-method	coerce-methods
coerce,ANY,list-method	coerce-methods
coerce,ANY,logical-method	coerce-methods
coerce,ANY,matrix-method	coerce-methods
coerce,ANY,name-method	coerce-methods
coerce,ANY,NULL-method	coerce-methods
coerce,ANY,numeric-method	coerce-methods
coerce,ANY,single-method	coerce-methods
coerce,ANY,ts-method	coerce-methods
coerce,ANY,vector-method	coerce-methods
coerce,data.frame,FCS-method	FCS-class
coerce,FCS,data.frame-method	FCS-class
coerce,FCS,matrix-method	FCS-class
coerce,matrix,FCS-method	FCS-class
coerce-methods	coerce-methods
colnames,cytoSet-method	cytoSet-class
colnames<-,cytoSet-method	cytoSet-class
ContourScatterPlot	ContourScatterPlot
convertS3toS4	convertS3toS4
createGate	createGate
cytoSet-class	cytoSet-class
densityplot.FCS	plotdensity.FCS
dim.FCS	dim.FCS-methods
dim.FCS,ANY-method	dim.FCS-methods
dim.FCS,FCS-method	FCS-class
dim.FCS-methods	dim.FCS-methods
emp.f	emp.f
equals	equals-methods
equals,FCS,FCS-method	FCS-class
equals-methods	equals-methods
extractGatedData	extractGatedData
extractGateHistory	extractGateHistory
FCS	FCS-class
FCS-class	FCS-class
FCS.type	fcs.type
fcs.type	fcs.type
fcs.type.cellquest.3.1.FACS.Vantage	fcs.type
fcs.type.cellquest.3.1.FACScan	fcs.type
fcs.type.cellquest.3.3	fcs.type
fcs.type.default	fcs.type
fcs.type.DiVa1024	fcs.type
fcs.type.FACSCalibur1024	fcs.type
fcs.type.facscan1024	fcs.type
fcs.type.facscan256	fcs.type
fcs.type.FACStar256	fcs.type
fcs.type.LSR1024	fcs.type
fcs.type.LSR256	fcs.type
fcs.type.LYSYS	fcs.type
FCSgate	FCSgate-class
FCSgate-class	FCSgate-class
FCSggobi	FCSggobi-class
FCSggobi-class	FCSggobi-class
FCSmetadata	FCSmetadata-class
FCSmetadata-class	FCSmetadata-class
FCSsummary	FCSsummary-class
FCSsummary-class	FCSsummary-class
FHCRC.HVTNFCS	FHCRC.HVTNFCS
fixvars	fixvars-methods
fixvars,FCS-method	FCS-class
fixvars-methods	fixvars-methods
fluors	fluors-methods
fluors,FCS-method	FCS-class
fluors-methods	fluors-methods
gate.IPC	gate.IPC
get.h	get.h
get.num.modes	get.num.modes
get.p	get.p
ggobi	ggobi-methods
ggobi,FCS-method	FCS-class
ggobi-methods	ggobi-methods
ggobi3.FCS	ggobi-methods
icreateGate	createGate
ImageParCoord	ImageParCoord
JointImageParCoord	ImageParCoord
KS	KS.flowcytest
KS.flowcytest	KS.flowcytest
legend.CSP	legend.CSP
length,cytoSet-method	cytoSet-class
make.density	make.grid
make.grid	make.grid
metaData	metaData-methods
metaData,FCS-method	FCS-class
metaData-methods	metaData-methods
MODE	MODE
pairs.CSP	pairs.CSP
parallel.coordinates	parallel.coordinates
parallelCoordinates	parallelCoordinates
pData,cytoSet-method	cytoSet-class
percentile.FCS	PercentPos.FCS
PercentPos.FCS	PercentPos.FCS
phenoData,cytoSet-method	cytoSet-class
phenoData<-,cytoSet,phenoData-method	cytoSet-class
pkci2	pkci2.flowcytest
pkci2.flowcytest	pkci2.flowcytest
plot,ANY,ANY-method	plot-methods
plot,FCS,missing-method	FCS-class
plot-methods	plot-methods
plot.ProbBin.FCS	plot.ProbBin.FCS
plot2sets.FCS	plot2sets.FCS
plotdensity.FCS	plotdensity.FCS
plotECDF.FCS	plotECDF.FCS
plotQA.FCS	plotQA.FCS
plotvar.FCS	plotvar.FCS
print,ANY-method	print-methods
print,FCS-method	FCS-class
print,FCSmetadata-method	FCSmetadata-class
print,FCSsummary-method	FCSsummary-class
print-methods	print-methods
print-methods,FCSmetadata-method	FCSmetadata-class
print-methods,FCSsummary-method	FCSsummary-class
ProbBin.by.control	ProbBin.flowcytest
ProbBin.combined	ProbBin.flowcytest
ProbBin.FCS	ProbBin.FCS
ProbBin.flowcytest	ProbBin.flowcytest
read.FCS	read.FCS
read.series.FCS	read.series.FCS
rect.box.idx	rect.box.idx
ROC.FCS	ROC.FCS
runflowcytests	runflowcytests
show,ANY-method	show-methods
show,classRepresentation-method	show-methods
show,cytoSet-method	cytoSet-class
show,FCS-method	FCS-class
show,FCSmetadata-method	FCSmetadata-class
show,FCSsummary-method	FCSsummary-class
show,genericFunction-method	show-methods
show,MethodDefinition-method	show-methods
show,MethodWithNext-method	show-methods
show,ObjectsWithPackage-method	show-methods
show,traceable-method	show-methods
show-methods	show-methods
show-methods,FCSmetadata-method	FCSmetadata-class
show-methods,FCSsummary-method	FCSsummary-class
showgate.FCS	showgate.FCS
standard	standard
summary,"ANY-method"	summary-methods
summary,FCS-method	FCS-class
summary,FCSmetadata-method	FCSmetadata-class
summary-methods	summary-methods
summary-methods,FCSmetadata-method	FCSmetadata-class
summary.ProbBin.FCS	summary.ProbBin.FCS
VRC.HVTNFCS	VRC.HVTNFCS
WLR	WLR.flowcytest
WLR.flowcytest	WLR.flowcytest
xgobi.FCS	xgobi.FCS
[,ANY-method	subset-methods
[,cytoSet-method	cytoSet-class
[,FCS-method	FCS-class
[,FCSmetadata-method	FCSmetadata-class
[,genericFunction-method	subset-methods
[-methods	subset-methods
[-methods,FCSmetadata-method	FCSmetadata-class
[<-,ANY-method	subsetassign-methods
[<-,FCS-method	FCS-class
[<-,FCSmetadata-method	FCSmetadata-class
[<-,genericFunction-method	subsetassign-methods
[<--methods	subsetassign-methods
[<--methods,FCSmetadata-method	FCSmetadata-class
[[,ANY-method	subset2-methods
[[,cytoSet-method	cytoSet-class
[[,FCS-method	FCS-class
[[,FCSmetadata-method	FCSmetadata-class
[[,genericFunction-method	subset2-methods
[[-methods	subset2-methods
[[-methods,FCSmetadata-method	FCSmetadata-class
[[<-,ANY-method	subset2assign-methods
[[<-,cytoSet-method	cytoSet-class
[[<-,FCS-method	FCS-class
[[<-,FCSmetadata-method	FCSmetadata-class
[[<-,genericFunction-method	subset2assign-methods
[[<--methods	subset2assign-methods
[[<--methods,FCSmetadata-method	FCSmetadata-class
