Massvectorlist-class         package:msbase         R Documentation

_C_l_a_s_s "_M_a_s_s_v_e_c_t_o_r_l_i_s_t"

_D_e_s_c_r_i_p_t_i_o_n:

     Container class for 'Massvector-class'

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form 'new("Massvectorlist",
     ...)'.

_S_l_o_t_s:

     '._D_a_t_a': Object of class '"list"', list of 'Massvector-class' 

     '_i_n_f_o': Object of class '"character"', information field 

     '_p_r_o_j_e_c_t': Object of class '"character"', _e.g._ project id  

     '_e_x_p_e_r_i_m_e_n_t': Object of class '"character"', _e.g._ experiment id 

_E_x_t_e_n_d_s:

     Class '"Mlist"', directly. Class '"list"', by class '"Mlist"'.

_M_e_t_h_o_d_s:

     [ 'signature(x = "Massvectorlist")'

     [[<- 'signature(x = "Massvectorlist")'

     [<- 'signature(x = "Massvectorlist")'  

     _c_o_e_r_c_e 'signature(from = "Massvectorlist", to = "matrix")'  

     _c_o_e_r_c_e 'signature(from = "Massvectorlist", to = "data.frame")' 

     _c_o_l._p_l_o_t 'signature(x = "Massvectorlist")': strip chart with color
          coded intensities

     _h_i_s_t 'signature(x = "Massvectorlist")': histogram of all masses in
          the massvectorlist

     _m_v_m_e_a_n_n_o_r_m 'signature(object = "Massvectorlist")':  

     _m_v_s_c_a_l_e 'signature(object = "Massvectorlist")': 'scale'

     _n_r_m_a_t_c_h 'signature(obx = "Massvectorlist", oby = "Massvector")':
          ... 

     _n_r_m_a_t_c_h 'signature(obx = "Massvectorlist", oby = "NULL")': ... 

     _p_e_p._p_l_o_t 'signature(x = "Massvectorlist", y = "missing")': ... 

     _p_l_o_t 'signature(x = "Massvectorlist", y = "missing")':  

     _r_e_a_d_B_r_u_k_e_r 'signature(object = "Massvectorlist")': ... 

     _r_e_a_d_M_V 'signature(object = "Massvectorlist", src = "character")':
          ... 

     _s_h_o_w 'signature(object = "Massvectorlist")': ... 

     _u_n_l_i_s_t 'signature(x = "Massvectorlist")': casts Massvectorlist
          into Massvector 

     _w_r_i_t_e_M_V 'signature(object = "Massvectorlist", path =
          "character")': ... 

_A_u_t_h_o_r(_s):

     Witold E. Wolski witek96@users.sourceforge.net

_S_e_e _A_l_s_o:

     'fdist-methods,fbinary-methods,fcor-methods',
     ,'Massvectorlist-class','fintersect-methods','gamasses-methods'
     ,'finterS-methods','funion-methods','nrmatch-methods'

_E_x_a_m_p_l_e_s:

     new("Massvectorlist")
     new("Massvectorlist",info="dumy",project="dummy",experiment="dummy")
     data(pldata)
     plot(pldata)
     hist(pldata)
     pep.plot(pldata,cex=0.4)
     col.plot(pldata,col=2) #intensity color coded
     tmp <- unlist(pldata)
     length(tmp)
     rm(tmp)

