Massvector-class           package:msbase           R Documentation

_C_l_a_s_s "_M_a_s_s_v_e_c_t_o_r"

_D_e_s_c_r_i_p_t_i_o_n:

     A concise (1-5 lines) description of what the class is.

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form 'new("Massvector",
     data, info, tcoor, gelcoor, access, pionm)'.

_S_l_o_t_s:

     '._D_a_t_a': Object of class '"matrix"'. First column contains masses.
          Second can contain intesnities.

     '_i_n_f_o': Object of class '"character"', information field

     '_t_c_o_o_r': Object of class '"numeric"', target coordinates

     '_g_e_l_c_o_o_r': Object of class '"numeric"', gel coordinates

     '_a_c_c_e_s_s': Object of class '"character"', accession string

     '_p_i_o_n_m': Object of class '"numeric"', parent ion mass

     '_z_v_a_l_u_e': Object of class '"numeric"', Charge of the parent ion

_E_x_t_e_n_d_s:

     Class '"matrix"', directly.

_M_e_t_h_o_d_s:

     [ 'signature(x = "Massvector")': ... 

     _c_o_e_r_c_e 'signature(from = "Massvector", to = "array")': ... 

     _c_o_e_r_c_e 'signature(from = "Massvector", to = "list")': ... 

     _c_o_e_r_c_e 'signature(from = "Massvector", to = "data.frame")': ... 

     _i_m_a_g_e 'signature(x = "Massvector")': ... 

     _i_n_i_t_i_a_l_i_z_e 'signature(.Object = "Massvector")': ... 

     _l_e_n_g_t_h 'signature(x = "Massvector")': ... 

     _m_v_m_e_a_n_n_o_r_m 'signature(object = "Massvector")': ... 

     _m_v_s_c_a_l_e 'signature(object = "Massvector")': see 'scale' 

     _p_l_o_t 'signature(x = "Massvector", y = "Massvector")': ... 

     _p_a_i_r_p_l_o_t 'signature(x = "Massvector", y ="Massvector")': 
          Head-To-Tail Plot

     _p_l_o_t 'signature(x = "Massvector", y = "missing")': ... 

     _p_o_i_n_t_s 'signature(x = "Massvector")': add stick spectrum to plot

     _r_e_a_d_B_r_u_k_e_r 'signature(object = "Massvector")': reads Bruker XML
          file 

     _r_e_a_d_M_V 'signature(object = "Massvector", src = "character")':
          reads Massvector from file 

     _s_h_o_w 'signature(object = "Massvector")':  

     _s_u_m_m_a_r_y 'signature(object = "Massvector")':  

     _w_r_i_t_e_M_V 'signature(object = "Massvector", path = "character")':
          writes Massvector to file

     _p_e_p._p_l_o_t 'signature(x = "Massvector", y = "missing")': 'pep.plot'

_N_o_t_e:

_A_u_t_h_o_r(_s):

     Witold E. Wolski witek96@users.sourceforge.net

_S_e_e _A_l_s_o:

     'fdist-methods,fbinary-methods,fcor-methods',
     ,'Massvectorlist-class','fintersect-methods','gamasses-methods'
     ,'finterS-methods','funion-methods','nrmatch-methods'

_E_x_a_m_p_l_e_s:

     data(pldata)
     new("Massvector")
     new("Massvector",matrix(1:20,ncol=2),info="dummy",tcoor=c(0,0),gelcoor=c(0,0))
     pl1<-pldata[[1]]
     pl2<-pldata[[2]]
     pl1
     plot(pl1)
     image(pl1)
     length(pl1)

