\HeaderA{qualityScore}{Quality Control score for general hybridization}{qualityScore}
\keyword{programming}{qualityScore}
\begin{Description}\relax
This function returns, for each quality measure, the
percentage of reference slides measures which are below the tested
slide values. For more details on this score, refer to the online
manual.
\end{Description}
\begin{Usage}
\begin{verbatim}qualityScore(slidequality, organism = c("Mm", "Hs"), reference =
NULL)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{slidequality}] A quality matrix from slideQuality.
\item[\code{reference}] A matrix resulting from globalQuality, to be used as
reference table to compare slides. If 'NULL', the default table
corresponding to organism will be used. See details for more
information.
\item[\code{organism}] A "character" string naming the organism genome
printed on the array, either "Mm" or "Hs". By default, organism is
set to "Mm". It is used to retrieve the corresponding reference tables.
\end{ldescription}
\end{Arguments}
\begin{Value}
A matrix of percentages.
\end{Value}
\begin{Author}\relax
Agnes Paquet
\end{Author}

