\HeaderA{Internal functions}{Internal arrayQuality functions}{Internal functions}
\aliasA{arrayControls}{Internal functions}{arrayControls}
\aliasA{arrayReplicates}{Internal functions}{arrayReplicates}
\aliasA{arrayScal}{Internal functions}{arrayScal}
\aliasA{BEbin.linear}{Internal functions}{BEbin.linear}
\aliasA{controlCodeMeebo}{Internal functions}{controlCodeMeebo}
\aliasA{EMSplit}{Internal functions}{EMSplit}
\aliasA{getSpikeIds}{Internal functions}{getSpikeIds}
\aliasA{getSpikeIndex}{Internal functions}{getSpikeIndex}
\aliasA{gpFlagWt}{Internal functions}{gpFlagWt}
\aliasA{MeeboSpotTypes}{Internal functions}{MeeboSpotTypes}
\aliasA{outputNormData}{Internal functions}{outputNormData}
\aliasA{qpBEplot.linear}{Internal functions}{qpBEplot.linear}
\aliasA{qpBoxplotMeebo}{Internal functions}{qpBoxplotMeebo}
\aliasA{qpDotPlots}{Internal functions}{qpDotPlots}
\aliasA{qpDotPlotsMeebo}{Internal functions}{qpDotPlotsMeebo}
\aliasA{qpDotPlotsMeebo2}{Internal functions}{qpDotPlotsMeebo2}
\aliasA{qpHexbin}{Internal functions}{qpHexbin}
\aliasA{qpImage}{Internal functions}{qpImage}
\aliasA{qpMAPlots}{Internal functions}{qpMAPlots}
\aliasA{qpMisMatchPlot}{Internal functions}{qpMisMatchPlot}
\aliasA{qpPTLoess}{Internal functions}{qpPTLoess}
\aliasA{qpS2N}{Internal functions}{qpS2N}
\aliasA{qpS2Nmeebo}{Internal functions}{qpS2Nmeebo}
\aliasA{qpTiling}{Internal functions}{qpTiling}
\aliasA{quality2HTML}{Internal functions}{quality2HTML}
\aliasA{readAllSpikes}{Internal functions}{readAllSpikes}
\aliasA{replicatesAvariance}{Internal functions}{replicatesAvariance}
\aliasA{setCtlCol}{Internal functions}{setCtlCol}
\aliasA{Spike.Cy5vsCy3}{Internal functions}{Spike.Cy5vsCy3}
\aliasA{Spike.Individual.Sensitivity}{Internal functions}{Spike.Individual.Sensitivity}
\aliasA{Spike.MM.Scatter}{Internal functions}{Spike.MM.Scatter}
\aliasA{Spike.MMplot}{Internal functions}{Spike.MMplot}
\aliasA{Spike.Sensitivity}{Internal functions}{Spike.Sensitivity}
\keyword{methods}{Internal functions}
\begin{Description}\relax
Internal arrayQuality functions
\end{Description}
\begin{Details}\relax
These are not to be called by the user.
\end{Details}

