\HeaderA{scaleRefTable}{General hybridization quality scaling}{scaleRefTable}
\keyword{programming}{scaleRefTable}
\begin{Description}\relax
This function helps you scale quality measures in order
to compare them on the same plot. It is used on reference slides to
create a look-up table, which will be used to scale other slides.
\end{Description}
\begin{Usage}
\begin{verbatim}scaleRefTable(reference=NULL, organism=c("Mm", "Hs"))\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{organism}] A "character" string naming the organism genome
printed on the array, either "Mm" or "Hs". By default, organism is
set to "Mm". It is used to retrieve the corresponding reference
tables.
\item[\code{reference}] A matrix resulting from globalQuality, to be used as
reference table to compare slides. If 'NULL', the default table
corresponding to organism will be used.
\end{ldescription}
\end{Arguments}
\begin{Value}
A matrix containing median and iqr for each quality measure for
tested slides.
\end{Value}
\begin{Author}\relax
Agnes Paquet
\end{Author}
\begin{SeeAlso}\relax
\code{\LinkA{gpQuality}{gpQuality}}, \code{\LinkA{globalQuality}{globalQuality}},
\code{\LinkA{qualBoxplot}{qualBoxplot}}
\end{SeeAlso}

