arrayData	arrayData-class
arrayData-class	arrayData-class
as.exprSet	exprSetRG-class
as.exprSet,exprSetRG-method	exprSetRG-class
as.RGList	arrayData-class
as.RGList,arrayData-method	arrayData-class
as.RGList,exprSetRG-method	exprSetRG-class
cbind.arrayData	cbind.arrayData
cbind.exprSetRG	cbind.exprSetRG
colCors	colCors
controlledApply	controlledApply
controlledSubsetting	controlledSubsetting
detectReplicas	detectReplicas
exprSetRG	exprSetRG-class
exprSetRG-class	exprSetRG-class
fdc	fdc
getExprSetGreen	exprSetRG-class
getExprSetGreen,exprSetRG-method	exprSetRG-class
getExprSetGreenMinusRed	exprSetRG-class
getExprSetGreenMinusRed,exprSetRG-method	exprSetRG-class
getExprSetLogRatio	exprSetRG-class
getExprSetLogRatio,exprSetRG-method	exprSetRG-class
getExprSetRed	exprSetRG-class
getExprSetRed,exprSetRG-method	exprSetRG-class
getExprSetRedMinusGreen	exprSetRG-class
getExprSetRedMinusGreen,exprSetRG-method	exprSetRG-class
getHybAttr	arrayData-class
getHybAttr,arrayData-method	arrayData-class
getHybAttrGreen	arrayData-class
getHybAttrGreen,arrayData-method	arrayData-class
getHybAttrList	arrayData-class
getHybAttrList,arrayData-method	arrayData-class
getHybAttrRed	arrayData-class
getHybAttrRed,arrayData-method	arrayData-class
getIndGreen	exprSetRG-class
getIndGreen,exprSetRG-method	exprSetRG-class
getIndRed	exprSetRG-class
getIndRed,exprSetRG-method	exprSetRG-class
getIntensities	arrayData-class
getIntensities,arrayData-method	arrayData-class
getSpotAttr	arrayData-class
getSpotAttr,arrayData-method	arrayData-class
getWeights	arrayData-class
getWeights,arrayData-method	arrayData-class
hybAttrList<-	arrayData-class
hybAttrList<-,arrayData-method	arrayData-class
initialize,arrayData-method	arrayData-class
initialize,exprSetRG-method	exprSetRG-class
intensities<-	arrayData-class
intensities<-,arrayData-method	arrayData-class
interweave	interweave
normalise	normalise
pDataGreen	exprSetRG-class
pDataGreen,exprSetRG-method	exprSetRG-class
pDataRed	exprSetRG-class
pDataRed,exprSetRG-method	exprSetRG-class
pDataSlide	exprSetRG-class
pDataSlide,exprSetRG-method	exprSetRG-class
phenoDataGreen	exprSetRG-class
phenoDataGreen,exprSetRG-method	exprSetRG-class
phenoDataRed	exprSetRG-class
phenoDataRed,exprSetRG-method	exprSetRG-class
phenoDataSlide	exprSetRG-class
phenoDataSlide,exprSetRG-method	exprSetRG-class
plot.imageMatrix	plot.imageMatrix
plotDistributions	plotDistributions
processArrayData	processArrayData
processArrayDataObject	processArrayDataObject
qualityDiagnostics	qualityDiagnostics
qualityParameters	qualityParameters
readIntensities	readIntensities
readpDataSlides	readpDataSlides
removeSpots	removeSpots
rowCors	colCors
show,arrayData-method	arrayData-class
show,exprSetRG-method	exprSetRG-class
simpleApply	simpleApply
slideMerge	slideMerge
slideSubset	exprSetRG-class
slideSubset,exprSetRG-method	exprSetRG-class
spatialLayout	spatialLayout
spotAttr<-	arrayData-class
spotAttr<-,arrayData-method	arrayData-class
spotMerge	spotMerge
visualiseHybridisations	visualiseHybridisations
visualiseQualityParameters	visualiseQualityParameters
weights<-	arrayData-class
weights<-,arrayData-method	arrayData-class
write.htmltable	write.htmltable
writeToFile	writeToFile
[,arrayData-method	arrayData-class
[,exprSetRG-method	exprSetRG-class
