\HeaderA{homoData-class}{Class "homoData"}{homoData.Rdash.class}
\aliasA{homoACC}{homoData-class}{homoACC}
\aliasA{homoACC,homoData-method}{homoData-class}{homoACC,homoData.Rdash.method}
\aliasA{homoData}{homoData-class}{homoData}
\aliasA{homoHGID}{homoData-class}{homoHGID}
\aliasA{homoHGID,homoData-method}{homoData-class}{homoHGID,homoData.Rdash.method}
\aliasA{homoLL}{homoData-class}{homoLL}
\aliasA{homoLL,homoData-method}{homoData-class}{homoLL,homoData.Rdash.method}
\aliasA{homoOrg}{homoData-class}{homoOrg}
\aliasA{homoOrg,homoData-method}{homoData-class}{homoOrg,homoData.Rdash.method}
\aliasA{homoPS}{homoData-class}{homoPS}
\aliasA{homoPS,homoData-method}{homoData-class}{homoPS,homoData.Rdash.method}
\aliasA{homoType}{homoData-class}{homoType}
\aliasA{homoType,homoData-method}{homoData-class}{homoType,homoData.Rdash.method}
\aliasA{homoURL}{homoData-class}{homoURL}
\aliasA{homoURL,homoData-method}{homoData-class}{homoURL,homoData.Rdash.method}
\aliasA{orgNameNCode}{homoData-class}{orgNameNCode}
\aliasA{show,homoData-method}{homoData-class}{show,homoData.Rdash.method}
\keyword{classes}{homoData-class}
\begin{Description}\relax
A class to present data for HomologGene data of a matching
sequence
\end{Description}
\begin{Section}{Objects from the Class}
Objects can be created by calls of the form \code{new("homoData", ...)}.
\end{Section}
\begin{Section}{Slots}
\describe{
\item[\code{homoOrg}:] Object of class \code{"character"} the
scientific name of the organism of interest
\item[\code{homoLL}:] Object of class \code{"numeric"} the LocusLink
id of the gene of interest
\item[\code{homoType}:] Object of class \code{"character"} the type of
similarity. Valid values include B - a recipiprocal best best
between 3 or more organisms, b - a reciprocal best match, and c -
a curated homology relationship 
\item[\code{homoPS}:] Object of class \code{"numeric"} percent
similarity value
\item[\code{homoURL}:] Object of class \code{"character"} the URL for
curated homology relationship
\item[\code{homoACC}:] Object of class \code{"character"} the
accession number
\item[\code{homoHGID}:] Object of class \code{"numeric"} the
internal HomologGeneID
}
\end{Section}
\begin{Section}{Methods}
\describe{
\item[homoPS] \code{signature(object = "homoData")}: the get function for
slot \code{homoPS}
\item[homoLL] \code{signature(object = "homoData")}: the get function
for slot \code{homoLL}
\item[homoOrg] \code{signature(object = "homoData")}: the get function
for slot \code{homoOrg}
\item[homoType] \code{signature(object = "homoData")}: the get function
for slot \code{homoType}
\item[homoURL] \code{signature(object = "homoData")}: the get function
for slot \code{homoURL}
\item[homoACC] \code{signature(object = "homoData")}: the get function
for slot \code{homoACC}
\item[homoHGID] \code{signature(object = "homoHGID")}: the get
function for slot \code{homoHGID}
}
\end{Section}
\begin{Note}\relax
This function is part of the Bioconductor project at Dana-Farber
Cancer Institute to provide Bioinfomatics functionalities throug R
\end{Note}
\begin{Author}\relax
Jianhua Zhang
\end{Author}
\begin{References}\relax
\url{ftp://ftp.ncbi.nih.gov/pub/HomoloGene/README}
\end{References}
\begin{Examples}
\begin{ExampleCode}
    new("homoData", homoPS = 82.3, homoLL = 2324853, homoOrg = "Homo sapins",
homoType = "B", homoURL = "", homoHGID = 12345)
\end{ExampleCode}
\end{Examples}

