homoData-class           package:annotate           R Documentation

_C_l_a_s_s "_h_o_m_o_D_a_t_a"

_D_e_s_c_r_i_p_t_i_o_n:

     A class to present data for HomologGene data of a matching
     sequence

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form 'new("homoData",
     ...)'.

_S_l_o_t_s:

     '_h_o_m_o_O_r_g': Object of class '"character"' the scientific name of
          the organism of interest

     '_h_o_m_o_L_L': Object of class '"numeric"' the LocusLink id of the gene
          of interest

     '_h_o_m_o_T_y_p_e': Object of class '"character"' the type of similarity.
          Valid values include B - a recipiprocal best best between 3
          or more organisms, b - a reciprocal best match, and c - a
          curated homology relationship 

     '_h_o_m_o_P_S': Object of class '"numeric"' percent similarity value

     '_h_o_m_o_U_R_L': Object of class '"character"' the URL for curated
          homology relationship

     '_h_o_m_o_A_C_C': Object of class '"character"' the accession number

     '_h_o_m_o_H_G_I_D': Object of class '"numeric"' the internal HomologGeneID

_M_e_t_h_o_d_s:

     _h_o_m_o_P_S 'signature(object = "homoData")': the get function for slot
          'homoPS'

     _h_o_m_o_L_L 'signature(object = "homoData")': the get function for slot
          'homoLL'

     _h_o_m_o_O_r_g 'signature(object = "homoData")': the get function for
          slot 'homoOrg'

     _h_o_m_o_T_y_p_e 'signature(object = "homoData")': the get function for
          slot 'homoType'

     _h_o_m_o_U_R_L 'signature(object = "homoData")': the get function for
          slot 'homoURL'

     _h_o_m_o_A_C_C 'signature(object = "homoData")': the get function for
          slot 'homoACC'

     _h_o_m_o_H_G_I_D 'signature(object = "homoHGID")': the get function for
          slot 'homoHGID'

_N_o_t_e:

     This function is part of the Bioconductor project at Dana-Farber
     Cancer Institute to provide Bioinfomatics functionalities throug R

_A_u_t_h_o_r(_s):

     Jianhua Zhang

_R_e_f_e_r_e_n_c_e_s:

     <URL: ftp://ftp.ncbi.nih.gov/pub/HomoloGene/README>

_E_x_a_m_p_l_e_s:

         new("homoData", homoPS = 82.3, homoLL = 2324853, homoOrg = "Homo sapins",
     homoType = "B", homoURL = "", homoHGID = 12345)

