\HeaderA{ACCNUMStats}{Provides statistics on the types of ids used for the ACCNUM
environment of a given data package}{ACCNUMStats}
\aliasA{whatACC}{ACCNUMStats}{whatACC}
\keyword{misc}{ACCNUMStats}
\begin{Description}\relax
Given a data package name, ACCNUMStats counts how many of the probe
ids are mapped to GenBank Accession numbers, UniGene ids, RefSeq ids,
or Image clone ids.
\end{Description}
\begin{Usage}
\begin{verbatim}
ACCNUMStats(pkgName)
whatACC(accs)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{pkgName}] \code{pkgName} a character string for the name of a
BioC data package
\item[\code{accs}] \code{accs} a vector of character string for the ids
whose type will be determined
\end{ldescription}
\end{Arguments}
\begin{Details}\relax
The ACCNUM environment of each BioC data package contains mappings
between probe ids and a set of public ids based on which mappings of
probe ids to other annotation data can be obtained using public data
sources. The set of ids were provided by a manufacturer or user at the
time when the data package was built. The manufacturer/user provided
ids can be of different types of public ids, such as GenBank Accession
number, UniGene ids, etc..

ACCNUMStats counts the number of probes that are mapped to different
types of public ids and have the results presented in a table.
\end{Details}
\begin{Value}
\end{Value}
\begin{Author}\relax
Jianhua Zhang
\end{Author}
\begin{References}\relax
The ACCNUM environment of a platform dependent BioC data package
\end{References}
\begin{Examples}
\begin{ExampleCode}
if(require("hgu95av2")){
    ACCNUMStats("hgu95av2")    
}
\end{ExampleCode}
\end{Examples}

