Returns a data.table
with one row per gene set.
This data.table
contains columns:
- set
- name of gene set
- cond_Z
- Z statistic for continuous component
- cont_P
- wald P value
- cont_effect
- difference in continuous regression coefficients between null and test sets (ie, the numerator of the Z-statistic.)
- disc_Z
- Z statistic for discrete
- disc_P
- wald P value
- disc_effect
- difference in discrete regression coefficients between null and test sets.
- combined_Z
- combined discrete and continuous Z statistic using Stouffer's method
- combined_P
- combined P value
- combined_adj
- FDR adjusted combined P value
# S4 method for GSEATests
summary(object, ...)
Arguments
- object
- A
GSEATests
object
- ...
- passed to
calcZ
Value
data.table
See also
gseaAfterBoot
Examples
## See the examples in gseaAfterBoot
example(gseaAfterBoot)
#> Warning: no help found for ‘gseaAfterBoot’