clusterPlot |
Visualize hierarchical clustering of samples |
ddiscgammagpd |
The discrete gamma-GPD spliced threshold distribution |
fdesponds |
Fit the type-I Pareto distribution as according to Desponds et al. (2016) |
fdiscgammagpd |
Fit the discrete gamma-GPD spliced threshold model |
get_mle |
Grab important output from a list of fits |
get_nllh |
Grab important output from a list of fits |
JS_desponds |
Compute the Jensen-Shannon distance between two fitted distributions using the Desponds model |
JS_dist |
Compute the Jensen-Shannon distance between two model fits |
JS_spliced |
Compute the Jensen-Shannon distance between two fitted discrete gamma-GPD spliced threshold distributions |
parseFile |
Load in and parse TCR data files for use by powerTCR |
parseFolder |
Load in and parse TCR data files for use by powerTCR |
pdiscgammagpd |
The discrete gamma-GPD spliced threshold distribution |
qdiscgammagpd |
The discrete gamma-GPD spliced threshold distribution |
rdiscgammagpd |
The discrete gamma-GPD spliced threshold distribution |
repertoires |
Two toy examples of sample TCR repertoires. |