Manipulating and exploring protein and proteomics data


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Documentation for package ‘Pbase’ version 0.20.0

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aa The 'Proteins' Class for Proteomics Data And Meta-Data
aa-method The 'Proteins' Class for Proteomics Data And Meta-Data
acols The 'Proteins' Class for Proteomics Data And Meta-Data
addIdentificationData-method The 'Proteins' Class for Proteomics Data And Meta-Data
addPeptideFragments The 'Proteins' Class for Proteomics Data And Meta-Data
addPeptideFragments-method The 'Proteins' Class for Proteomics Data And Meta-Data
avarLabels The 'Proteins' Class for Proteomics Data And Meta-Data
avarLabels-method The 'Proteins' Class for Proteomics Data And Meta-Data
calculateHeavyLabels Calculate heavy labeled peptides
class:Proteins The 'Proteins' Class for Proteomics Data And Meta-Data
cleave-method The 'Proteins' Class for Proteomics Data And Meta-Data
etrid2grl From a transcript identifier to 'GRanges' object
isCleaved The 'Proteins' Class for Proteomics Data And Meta-Data
isForward Are all the ranges on the same strand
isReverse Are all the ranges on the same strand
length-method The 'Proteins' Class for Proteomics Data And Meta-Data
mapToGenome Map range coordinates between proteins and genome space
mapToGenome-method Map range coordinates between proteins and genome space
mapToGenome-methods Map range coordinates between proteins and genome space
metadata-method The 'Proteins' Class for Proteomics Data And Meta-Data
metadata<--method The 'Proteins' Class for Proteomics Data And Meta-Data
names-method The 'Proteins' Class for Proteomics Data And Meta-Data
p Data accompanying the 'Pbase' package
pcols The 'Proteins' Class for Proteomics Data And Meta-Data
pfeatures The 'Proteins' Class for Proteomics Data And Meta-Data
pfeatures-method The 'Proteins' Class for Proteomics Data And Meta-Data
pfilter The 'Proteins' Class for Proteomics Data And Meta-Data
pfilter-method The 'Proteins' Class for Proteomics Data And Meta-Data
plot-method The 'Proteins' Class for Proteomics Data And Meta-Data
plotAsAnnotationTrack Plot gene region and annotation tracks
plotAsGeneRegionTrack Plot gene region and annotation tracks
pmapToGenome Map range coordinates between proteins and genome space
pmapToGenome-method Map range coordinates between proteins and genome space
pmapToGenome-methods Map range coordinates between proteins and genome space
pms Data accompanying the 'Pbase' package
Pparams Class '"Pparams"'
Pparams-class Class '"Pparams"'
pranges The 'Proteins' Class for Proteomics Data And Meta-Data
pranges-method The 'Proteins' Class for Proteomics Data And Meta-Data
pranges<- The 'Proteins' Class for Proteomics Data And Meta-Data
pranges<--method The 'Proteins' Class for Proteomics Data And Meta-Data
proteinCoding Only keep protein coding ranges
proteinCoding-method Only keep protein coding ranges
proteinCoding-methods Only keep protein coding ranges
proteinCoverage The 'Proteins' Class for Proteomics Data And Meta-Data
Proteins The 'Proteins' Class for Proteomics Data And Meta-Data
Proteins-class The 'Proteins' Class for Proteomics Data And Meta-Data
Proteins-method The 'Proteins' Class for Proteomics Data And Meta-Data
proteotypic The 'Proteins' Class for Proteomics Data And Meta-Data
pvarLabels The 'Proteins' Class for Proteomics Data And Meta-Data
pvarLabels-method The 'Proteins' Class for Proteomics Data And Meta-Data
rmEmptyRanges The 'Proteins' Class for Proteomics Data And Meta-Data
seqnames-method The 'Proteins' Class for Proteomics Data And Meta-Data
show-method Class '"Pparams"'
show-method The 'Proteins' Class for Proteomics Data And Meta-Data
[-method The 'Proteins' Class for Proteomics Data And Meta-Data
[[-method The 'Proteins' Class for Proteomics Data And Meta-Data