Package: destiny
Type: Package
Title: Creates diffusion maps
Version: 2.10.0
Date: 2014-12-19
Authors@R: c(
	person('Philipp', 'Angerer', NULL, 'philipp.angerer@helmholtz-muenchen.de', c('cre', 'aut')),
	person('Laleh', 'Haghverdi', NULL, 'laleh.haghverdi@helmholtz-muenchen.de', 'ctb'),
	person('Maren', 'Büttner', NULL, 'maren.buettner@helmholtz-muenchen.de', 'ctb'),
	person('Fabian', 'Theis', NULL, 'fabian.theis@helmholtz-muenchen.de', 'ctb'),
	person('Carsten', 'Marr', NULL, 'carsten.marr@helmholtz-muenchen.de', 'ctb'),
	person('Florian', 'Büttner', NULL, 'f.buettner@helmholtz-muenchen.de', 'ctb'))
Description: Create and plot diffusion maps.
License: GPL
Encoding: UTF-8
Depends: R (>= 3.3.0)
Imports: methods, graphics, grDevices, utils, stats, Matrix, Rcpp (>=
        0.10.3), RcppEigen, Biobase, BiocGenerics,
        SummarizedExperiment, ggplot2, ggthemes, VIM, proxy, igraph,
        smoother, scales, scatterplot3d
LinkingTo: Rcpp, RcppEigen, grDevices
SystemRequirements: C++11
NeedsCompilation: yes
Enhances: rgl, SingleCellExperiment
Suggests: nbconvertR, testthat, SingleCellExperiment
VignetteBuilder: nbconvertR
biocViews: CellBiology, CellBasedAssays, Clustering, Software,
        Visualization
Collate: 'RcppExports.R' 'aaa.r' 'accessor-generics.r' 'censoring.r'
        'colorlegend.r' 'compat.r' 'cube_helix.r' 'dataset-helpers.r'
        'destiny-package.r' 's4-unions.r' 'dist-matrix-coerce.r'
        'sigmas.r' 'diffusionmap.r' 'diffusionmap-methods-accession.r'
        'diffusionmap-methods.r' 'plothelpers.r'
        'diffusionmap-plotting.r' 'dpt-branching.r' 'dpt-helpers.r'
        'dpt.r' 'dpt-methods-matrix.r' 'dpt-methods.r' 'utils.r'
        'dpt-plotting.r' 'eig_decomp.r' 'expressionset-helpers.r'
        'find_dm_k.r' 'gene-relevance.r' 'gene-relevance-methods.r'
        'gene-relevance-plotting.r' 'guo-data.r' 'knn.r' 'l_which.r'
        'methods-coercion.r' 'methods-extraction.r' 'methods-update.r'
        'predict.r' 'projection-dist.r' 'rankcor.r' 'sigmas-plotting.r'
RoxygenNote: 6.0.1.9000
Packaged: 2018-05-01 00:27:31 UTC; biocbuild
Author: Philipp Angerer [cre, aut],
  Laleh Haghverdi [ctb],
  Maren Büttner [ctb],
  Fabian Theis [ctb],
  Carsten Marr [ctb],
  Florian Büttner [ctb]
Maintainer: Philipp Angerer <philipp.angerer@helmholtz-muenchen.de>
Built: R 3.5.0; x86_64-apple-darwin15.6.0; 2018-05-01 07:30:42 UTC; unix
