Survival analysis using transcriptional networks inferred by the RTN package


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Documentation for package ‘RTNsurvival’ version 1.4.1

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RTNsurvival-package Performs survival analysis using transcriptional networks inferred by the RTN package.
RTNsurvival Performs survival analysis using transcriptional networks inferred by the RTN package.
survival.data A pre-processed dataset for demonstration purposes only.
tni2tnsPreprocess Preprocessing of TNS class objects
tni2tnsPreprocess-method Preprocessing of TNS class objects
TNS TNS: An S4 class for survival analysis using transcriptional networks inferred by the RTN package.
TNS-class TNS: An S4 class for survival analysis using transcriptional networks inferred by the RTN package.
tnsCox Cox regression analysis for TNS class objects
tnsCox-method Cox regression analysis for TNS class objects
tnsCoxInteraction Cox regression analysis for dual regulons
tnsCoxInteraction-method Cox regression analysis for dual regulons
tnsGet Get information from slots in a TNS object
tnsGet-method Get information from slots in a TNS object
tnsGSEA2 2-tailed Gene Set Enrichment Analysis on Transcriptional Networks
tnsGSEA2-method 2-tailed Gene Set Enrichment Analysis on Transcriptional Networks
tnsInteraction Survival analysis for dual regulons
tnsInteraction-method Survival analysis for dual regulons
tnsKM Kaplan-Meier analysis for TNS class objects
tnsKM-method Kaplan-Meier analysis for TNS class objects
tnsKmInteraction Kaplan-Meier analysis for dual regulons
tnsKmInteraction-method Kaplan-Meier analysis for dual regulons
tnsPlotCox Cox plots for TNS class objects
tnsPlotCox-method Cox plots for TNS class objects
tnsPlotCoxInteraction Plot results from Cox regression analysis for dual regulons
tnsPlotCoxInteraction-method Plot results from Cox regression analysis for dual regulons
tnsPlotGSEA2 Plot 2-tailed GSEA for a sample from a TNS
tnsPlotGSEA2-method Plot 2-tailed GSEA for a sample from a TNS
tnsPlotKM Kaplan-Meier plots for TNS class objects
tnsPlotKM-method Kaplan-Meier plots for TNS class objects
tnsPlotKmInteraction Plot results from Kaplan-Meier analysis for dual regulons
tnsPlotKmInteraction-method Plot results from Kaplan-Meier analysis for dual regulons
tnsStratification Sample stratification for a TNS object