RTNsurvival-package | Performs survival analysis using transcriptional networks inferred by the RTN package. |
RTNsurvival | Performs survival analysis using transcriptional networks inferred by the RTN package. |
survival.data | A pre-processed dataset for demonstration purposes only. |
tni2tnsPreprocess | Preprocessing of TNS class objects |
tni2tnsPreprocess-method | Preprocessing of TNS class objects |
TNS | TNS: An S4 class for survival analysis using transcriptional networks inferred by the RTN package. |
TNS-class | TNS: An S4 class for survival analysis using transcriptional networks inferred by the RTN package. |
tnsCox | Cox regression analysis for TNS class objects |
tnsCox-method | Cox regression analysis for TNS class objects |
tnsCoxInteraction | Cox regression analysis for dual regulons |
tnsCoxInteraction-method | Cox regression analysis for dual regulons |
tnsGet | Get information from slots in a TNS object |
tnsGet-method | Get information from slots in a TNS object |
tnsGSEA2 | 2-tailed Gene Set Enrichment Analysis on Transcriptional Networks |
tnsGSEA2-method | 2-tailed Gene Set Enrichment Analysis on Transcriptional Networks |
tnsInteraction | Survival analysis for dual regulons |
tnsInteraction-method | Survival analysis for dual regulons |
tnsKM | Kaplan-Meier analysis for TNS class objects |
tnsKM-method | Kaplan-Meier analysis for TNS class objects |
tnsKmInteraction | Kaplan-Meier analysis for dual regulons |
tnsKmInteraction-method | Kaplan-Meier analysis for dual regulons |
tnsPlotCox | Cox plots for TNS class objects |
tnsPlotCox-method | Cox plots for TNS class objects |
tnsPlotCoxInteraction | Plot results from Cox regression analysis for dual regulons |
tnsPlotCoxInteraction-method | Plot results from Cox regression analysis for dual regulons |
tnsPlotGSEA2 | Plot 2-tailed GSEA for a sample from a TNS |
tnsPlotGSEA2-method | Plot 2-tailed GSEA for a sample from a TNS |
tnsPlotKM | Kaplan-Meier plots for TNS class objects |
tnsPlotKM-method | Kaplan-Meier plots for TNS class objects |
tnsPlotKmInteraction | Plot results from Kaplan-Meier analysis for dual regulons |
tnsPlotKmInteraction-method | Plot results from Kaplan-Meier analysis for dual regulons |
tnsStratification | Sample stratification for a TNS object |