summary.tsp {tspair} | R Documentation |
This function can be used to summarize a TSP object.
## S3 method for class 'tsp' summary(object,select=NULL,printall=FALSE,...)
object |
A tsp object |
select |
A numerical indicator of which TSP to summarize, if NULL, all TSPs are summarized one at a time |
printall |
If printall=TRUE all TSPs are summarized at once |
... |
Summary arguments (ignored) |
summary() accepts a tsp object calculated on an expression set or gene expression matrix. The result is a table of frequencies for the TSP indicator versus the group indicator.
A table.
Jeffrey T. Leek jtleek@jhu.edu
D. Geman, C. d'Avignon, D. Naiman and R. Winslow, "Classifying gene expression profiles from pairwise mRNA comparisons," Statist. Appl. in Genetics and Molecular Biology, 3, 2004.
tspplot
, ts.pair
, tspcalc
,tspsig
, predict.tsp
## Not run: ## Load data data(tspdata) ## Run tspcalc() on a data matrix and grp vector tsp1 <- tspcalc(dat,grp) ## Get the summary for the tsp object. summary(tsp1) summary.tsp(tsp1) ## End(Not run)