plotBioNetBars {caOmicsV} | R Documentation |
Bar plot method for caOmicsV bioNetCircos layout. This will plot one track of bars for every node. bioNetCircos layout and graphic device must be initialized first.
plotBioNetBars(dataValues, outer, inner, plotColors)
dataValues |
numeric matrix with range of 0 ~ 1 for bar height. total rows of the matrix must be same as the number of nodes and row names must be same as the vertex names in bioNetGraph |
outer |
non-negative numeric, the outside boundary of plot area from node center |
inner |
non-negative numeric, the inside boundary of plot area from node center |
plotColors |
character vector or vector of R color specification, color names for each sample, pre-generated to control sample colors. |
None
Henry Zhang
data(bionetPlotDemoData) expr <- bionetPlotDemoData$heatmapData[[1]] bioNet <- bc3net(expr) initializeBioNetCircos(bioNet, totalSamples=60) showBioNetNodesLayout() methyl <- bionetPlotDemoData$categoryData[[1]] sampleColors <- c(rep("red", 20), rep("blue", 20), rep("cyan", 20)) plotBioNetBars(methyl, outer=1.6, inner=1.5, plotColors=sampleColors)