aggregateMatches | aggregateMatches |
assignKdType | assignKdType |
c-method | miRNA affinity models |
conservation | conservation |
dummyKdData | Create dummy log_kd per 12-mer data |
findSeedMatches | Predicting and characterizing miRNA binding sites |
get3pAlignment | Finds 3' complementary binding of a miRNA |
get8merRange | get8merRange |
getKdModel | getKdModel |
getKmers | getKmers |
getMatchTypes | getMatchTypes |
getRandomSeq | getRandomSeq |
getSeed8mers | getSeed8mers |
KdModel | miRNA affinity models |
KdModel-class | miRNA affinity models |
KdModel-methods | miRNA affinity models |
KdModelList | KdModelList |
KdModelList-class | KdModelList |
KdModelList-methods | Methods for the 'KdModelList' classes |
KdModelList-methods-method | Methods for the 'KdModelList' classes |
plotKdModel | plotKdModel |
removeOverlappingRanges | removeOverlappingRanges |
SampleKdModel | Example KdModel (hsa-miR-155-5p) |
SampleTranscript | Example transcript sequence |
show-method | miRNA affinity models |
summary-method | miRNA affinity models |
summary-method | Methods for the 'KdModelList' classes |
viewTargetAlignment | viewTargetAlignment |
[-method | Methods for the 'KdModelList' classes |