Generate Quality Surrogate Variable Analysis for Degradation Correction


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Documentation for package ‘qsvaR’ version 1.0.0

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covComb_tx_deg RSE object of RNA-seq data that serves as output for degradation analysis
degradation_tstats Degradation time t-statistics
DEqual Differential expression quality (DEqual) plot
getDegTx Obtain expression matrix for degraded transcripts
getPCs PCs from transcripts
get_qsvs Generate matrix of qsvs
k_qsvs Apply num.sv algorithm to determine the number of pcs to be included
qSVA A wrapper function used to perform qSVA in one step.
select_transcripts Select transcripts associated with degradation
transcripts Transcripts for Degradation Models