Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering


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Documentation for package ‘projectR’ version 1.12.0

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alluvialMat alluvialMat
AP.RNAseq6l3c3t CoGAPS patterns and genes weights for p.RNAseq6l3c3t
aucMat aucMat
cluster2pattern Generic cluster2pattern function
cluster2pattern-method Generic cluster2pattern function
clusterPlotR Generic clusterPlotR function
clusterPlotR-method Generic clusterPlotR function
correlateR correlateR
correlateR-class correlateR
geneMatchR Generic geneMatchR function
initialize-method Constructor for correlateR
initialize-method Constructor for rotatoR
intersectoR Generic intersectoR function
intersectoR-method Generic intersectoR function
map.ESepiGen4c1l RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells
map.RNAseq6l3c3t RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points
p.ESepiGen4c1l RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells
p.RNAseq6l3c3t RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points
pd.ESepiGen4c1l RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells
pd.RNAseq6l3c3t RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points
projectR Generic projectR function
projectR-method Generic projectR function
rotatoR rotatoR
rotatoR-class rotatoR