dpeak-package | dPeak (Deconvolution of Peaks in ChIP-seq Analysis) |
dpeak | dPeak (Deconvolution of Peaks in ChIP-seq Analysis) |
DpeakData-class | Class "DpeakData" |
dpeakFit | Fit dPeak model |
DpeakFit-class | Class "DpeakFit" |
dpeakFit-method | Fit dPeak model |
dpeakMotif | Implement de novo motif analysis based on the peak list |
DpeakMotif-class | Class "DpeakMotif" |
dpeakRead | Import peak list and aligned read files |
exampleData | E. coli ChIP-seq Dataset |
exportPeakList | Export deconvolution results to text files |
exportPeakList-method | Export deconvolution results to text files |
exportPlot | Export plots to pdf files. |
exportPlot-method | Class "DpeakData" |
exportPlot-method | Class "DpeakFit" |
printEmpty | Return the peak regions without any reads. |
printEmpty-method | Return the peak regions without any reads. |
show-method | Class "DpeakData" |
show-method | Class "DpeakFit" |
show-method | Class "DpeakMotif" |