AddModuleScore_UCell | Calculate module enrichment scores from single-cell data (Seurat interface) |
calculate_Uscore | Calculate rankings and scores for query data and given signature set |
check_genes | Check if all genes in signatures are found in data matrix - otherwise add zero counts in data-matrix to complete it |
check_signature_names | Check signature names and add standard names is missing |
data_to_ranks_data_table | Calculate per-cell feature rankings |
rankings2Uscore | Get signature scores from pre-computed rank matrix |
sample.matrix | Sample dataset to test UCell installation |
ScoreSignatures_UCell | Calculate module enrichment scores from single-cell data |
split_data.matrix | Split data matrix into smaller sub-matrices ('chunks') |
StoreRankings_UCell | Calculate and store gene rankings for a single-cell dataset |
UCell | UCell: Robust and scalable single-cell gene signature scoring |
u_stat | Calculate Mann Whitney U from a vector of ranks |
u_stat_signature_list | Calculate U scores for a list of signatures, given a rank matrix |