Rank-based signature enrichment analysis for single-cell data


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Documentation for package ‘UCell’ version 2.0.1

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AddModuleScore_UCell Calculate module enrichment scores from single-cell data (Seurat interface)
calculate_Uscore Calculate rankings and scores for query data and given signature set
check_genes Check if all genes in signatures are found in data matrix - otherwise add zero counts in data-matrix to complete it
check_signature_names Check signature names and add standard names is missing
data_to_ranks_data_table Calculate per-cell feature rankings
rankings2Uscore Get signature scores from pre-computed rank matrix
sample.matrix Sample dataset to test UCell installation
ScoreSignatures_UCell Calculate module enrichment scores from single-cell data
split_data.matrix Split data matrix into smaller sub-matrices ('chunks')
StoreRankings_UCell Calculate and store gene rankings for a single-cell dataset
UCell UCell: Robust and scalable single-cell gene signature scoring
u_stat Calculate Mann Whitney U from a vector of ranks
u_stat_signature_list Calculate U scores for a list of signatures, given a rank matrix