A CAusal Reasoning tool for Network Identification (from gene expression data) using Integer VALue programming


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Documentation for package ‘CARNIVAL’ version 2.6.2

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checkOptionsValidity Checks if provided option names are valid.
defaultCbcSolveCarnivalOptions Sets default CARNIVAL options for cbc.
defaultCplexCarnivalOptions Sets default CARNIVAL options for cplex.
defaultCplexSpecificOptions Sets default options from cplex documentation.
defaultLpSolveCarnivalOptions Sets default CARNIVAL options for lpSolve.
generateLpFileCarnival 'generateLpFileCarnival'
getOptionsList Returns the list of options needed/supported for each solver.
getSupportedSolvers Returns the list of supported solvers.
isInputValidCarnival Checks validity of all inputs of CARNIVAL
parseCplexLog Parses the cplex log file and reads some basic information.
runCARNIVAL 'runCARNIVAL'
runFromLpCarnival 'runCarnivalFromLp'
runInverseCarnival 'runInverseCarnival'
runVanillaCarnival 'runVanillaCarnival'
setCarnivalOptions Sets CARNIVAL options for the solver.
suggestedCbcSpecificOptions Suggests cbc specific options.
suggestedCplexSpecificOptions Suggests cplex specific options.s
writeCplexCommandFileFromJson writeCplexCommandFileFromJson