All functions

bambu()

long read isoform reconstruction and quantification

plot(<bambu>)

plot.bambu

prepareAnnotations()

prepare annotations from txdb object

prepareAnnotationsFromGTF()

Prepare annotation granges object from GTF file into a GRangesList object

readFromGTF()

convert a GTF file into a GRangesList

transcriptToGeneExpression()

transcript to gene expression

writeBambuOutput()

Write bambu results to GTF and transcript/gene-count files

writeToGTF()

write GRangeslist into GTF file